BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZB12FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1126 0.0
>3x_Contig1173
Length = 7454
Score = 1126 bits (568), Expect = 0.0
Identities = 633/653 (96%), Gaps = 2/653 (0%)
Strand = Plus / Minus
Query: 93 tgatttcttttactgttctgtcaagatt-gaagtagacttcggtttaagaaaattttgag 151
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4046 tgatttcttttactgttctgtcaagatttgaagtagacttcggtttaagaaaattttgag 3987
Query: 152 ctcatcgcatctcatcgcatattttacagtgctagcagcattaagcttggaatgccagta 211
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 ctcatcgcatctcatcgcatagtttacagtgctagcagcattaagcttggaatgccagta 3927
Query: 212 aaactaccacaattacatacatactatcttgcaatcgtgcagaatcaatgtcacaatttt 271
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 aaactaccacaattaca-acatactatcttgcaatcgtgcagaatcaatgtcacaatttt 3868
Query: 272 ttgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccagggaca 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3867 ttgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccagggaca 3808
Query: 332 atttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgctttct 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3807 atttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgctttct 3748
Query: 392 cacattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaagggaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3747 cacattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaagggaa 3688
Query: 452 gtaatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatctctt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3687 gtaatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatctctt 3628
Query: 512 tacctcacagatcccagattgtttattcaccagattcctnctatatcatgcagcggatgg 571
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 3627 tacctcacagaacccagattgtttatacaccagattcctcctatatcatgcagcggatgg 3568
Query: 572 agtgncatcctatatctanggtcattgaagcaggtacggggtcaagtttcttttctcatg 631
|||| |||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 3567 agtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttccttttctcatg 3508
Query: 632 cgtttgccagatctgcaggtcatttattctcatatgagtttcacgatgtaagattcgatc 691
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |
Sbjct: 3507 cgtttgccagatctgcaggtcatttattctcatatgagttccacgaagtaagatacgaac 3448
Query: 692 aagcgaagcaagaatttaaagaacctggactatggggagctggaaacactacc 744
|||||||||| ||||||||||||| |||||||| || ||||||||||||||||
Sbjct: 3447 aagcgaagcaggaatttaaagaacatggactattggaagctggaaacactacc 3395
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6545
Number of Sequences: 1807
Number of extensions: 6545
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)