BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZC01FM1.SCF screened BAC_end
         (955 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1085                                                        1350   0.0  

>3x_Contig1085 
          Length = 5008

 Score = 1350 bits (681), Expect = 0.0
 Identities = 705/709 (99%), Gaps = 3/709 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   ttaggagctttataaaaagaaatgaggtttggaagtgtcttggcgaggaatatatcgtta 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4063 ttaggagctttataaaaagaaatgaggtttggaagtgtcttggcgaggaatatatcgtta 4122

                                                                        
Query: 147  tggaaatacttaaaagtgaccctaggacacctcaacgcatttgataagatgatgttatgg 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4123 tggaaatacttaaaagtgaccctaggacacctcaacgcatttgataagatgatgttatgg 4182

                                                                        
Query: 207  ctgcgagttataacttcagtgggaattatcgtttttgtccttgttttgactgctatttct 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4183 ctgcgagttataacttcagtgggaattatcgtttttgtccttgttttgactgctatttct 4242

                                                                        
Query: 267  gccgcatcaccaaattcgttatatttaggacgattggacacttcaaatgttaacattttg 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4243 gccgcatcaccaaattcgttatatttaggacgattggacacttcaaatgttaacattttg 4302

                                                                        
Query: 327  cagggactatttgataagctcagcagttctgttgtcagtgcaaaactgtctgatattaat 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4303 cagggactatttgataagctcagcagttctgttgtcagtgcaaaactgtctgatattaat 4362

                                                                        
Query: 387  aacggagcaggactcacaacagcagagattcttttactcacgcggtatgtagactcacag 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4363 aacggagcaggactcacaacagcagagattcttttactcacgcggtatgtagactcacag 4422

                                                                        
Query: 447  gtccacgacgtgcccgattatataaagacaggagtttacggatggtgcagcatgaaacat 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4423 gtccacgacgtgcccgattatataaagacaggagtttacggatggtgcagcatgaaacat 4482

                                                                        
Query: 507  gcttctcaagaattatggcagcctgacggtacttggaaggaggaacataactctacaaag 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483 gcttctcaagaattatggcagcctgacggtacttggaaggaggaacataactctacaaag 4542

                                                                        
Query: 567  gctatgacttgtcacagggaaggagcgcaatacttattgaactatagaaagctattagat 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4543 gctatgacttgtcacagggaaggagcgcaatacttattgaactatagaaagctattagat 4602

                                                                        
Query: 627  gacctaggtttgggaatagtgttaagttacgcatacggatatacttacaacgatggttgt 686
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4603 gacctaggtttgggaatagtgttaagttacgcatacggatatacttacaacgatgg-tgt 4661

                                                                        
Query: 687  tttggatcacgacaatgcagaaagtgcaaaatacaacaaatttttggctggctttgtcaa 746
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 4662 tttggatcacgacaatgcagaaagtgcaaaatacaacaaatttttggct-gctttgtcga 4720

                                                             
Query: 747  gaagaaaagtcaacatggtcaatcttactttacgtcgtggcagtattgg 795
            |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4721 gaagaaaagtcaacatggtcaatc-tactttacgtcgtggcagtattgg 4768


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5870
Number of Sequences: 1807
Number of extensions: 5870
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)