BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC01RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1671 1239 0.0
>3x_Contig1671
Length = 12265
Score = 1239 bits (625), Expect = 0.0
Identities = 710/732 (96%), Gaps = 5/732 (0%)
Strand = Plus / Plus
Query: 47 ctctagttgttcatgcttcgctttcacttcatcgtccattagtaacattaaatcatcaga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6460 ctctagttgttcatgcttcgctttcacttcatcgtccattagtaacattaaatcatcaga 6519
Query: 107 tccactttcaccgctggagtaccgttgaattagtgagttagtgtgatagaaattcgtttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6520 tccactttcaccgctggagtaccgttgaattagtgagttagtgtgatagaaattcgtttt 6579
Query: 167 ctgtttcaattcctccatcttctcttgatgtaaggatattaatgctgagagcctcgactc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6580 ctgtttcaattcctccatcttctcttgatgtaaggatattaatgctgagagcctcgactc 6639
Query: 227 atattttttattgagcatgagatagaatcttgttatggcaagccttatgcatattagtaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6640 atattttttattgagcatgagatagaatcttgttatggcaagccttatgcatattagtaa 6699
Query: 287 agctagtgctacaatgctgcataagatagcacgcgaagatgaatacttcaaataaacata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6700 agctagtgctacaatgctgcataagatagcacgcgaagatgaatacttcaaataaacata 6759
Query: 347 tgcaattatgcaaaccaataacgtcaaataataataagttactgttgcacgtaaactttt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6760 tgcaattatgcaaaccaataacgtcaaataataataagttactgttgcacgtaaactttt 6819
Query: 407 ggctctatcttcgattcccttcaatttcgtttcgtagtcatgtatcttattcgttatgga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6820 ggctctatcttcgattcccttcaatttcgtttcgtagtcatgtatcttattcgttatgga 6879
Query: 467 agataagtctttgttatacctttgaactaacttcttaacatcattatcgccacttacaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 agataagtctttgttatacctttgaactaacttcttaacatcattatcgccacttacaat 6939
Query: 527 ctttcgtacggcgctcaacatgttaaggtatcaatatctacttccctttgatgtccgatc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6940 ctttcgtacggcgctcaacatgttaaggtatcaatatctacttccctttgatgtccgatc 6999
Query: 587 tcgagaaaccctttattttangtagtccatttttttttacatagttggttggtaggctat 646
|||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct: 7000 tcgagaaaccctttattttaggtagtccatttttttttacatagtt-gtttgtaggctat 7058
Query: 647 aatgatccctttaatatcaaatccactgtatttcttaattcctattgccgaaaaaatatt 706
|||||||| || ||||||||||||| |||||| ||| || ||||| ||||||| || |
Sbjct: 7059 aatgatcctttaaatatcaaatccatgttatttc-taaatcatattgacgaaaaatta-t 7116
Query: 707 tgaaattgaagaattccggaacagacgatggaattacccccaaaaccagtcattttgggg 766
|||||||||||||||| ||||||||||||||||| | | ||||||| ||||| ||| |||
Sbjct: 7117 tgaaattgaagaattcgggaacagacgatggaatga-cgccaaaacaagtcagttt-ggg 7174
Query: 767 ttttttaaaacc 778
||| ||||||||
Sbjct: 7175 tttcttaaaacc 7186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8549
Number of Sequences: 1807
Number of extensions: 8549
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)