BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC02FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1453 0.0
>3x_Contig1730
Length = 17223
Score = 1453 bits (733), Expect = 0.0
Identities = 787/800 (98%), Gaps = 4/800 (0%)
Strand = Plus / Plus
Query: 87 attgcggcagaattagcaaccaatgctggtgtccataccatcattatgaagagcgacact 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 attgcggcagaattagcaaccaatgctggtgtccataccatcattatgaagagcgacact 2739
Query: 147 ccagaaaacatttccaaaattgttctctacatgcaggaaagggacgatggcgtgaatgaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 ccagaaaacatttccaaaattgttctctacatgcaggaaagggacgatggcgtgaatgaa 2799
Query: 207 cttacacaagatttggctgacctacaactcactgagatgcaaagtttagttaataatcat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 cttacacaagatttggctgacctacaactcactgagatgcaaagtttagttaataatcat 2859
Query: 267 gttcctcttcatactaggtttattgccaatagtaatcatcatcacttgaagaacagacaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 gttcctcttcatactaggtttattgccaatagtaatcatcatcacttgaagaacagacaa 2919
Query: 327 ttctggatgcttcatggactcgtcagtcaaggcgctgtaattatagacattggtgcatac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 ttctggatgcttcatggactcgtcagtcaaggcgctgtaattatagacattggtgcatac 2979
Query: 387 gaagcgttaacgaggaaaaacaaagctggtttgttacctgcaggcgttattgaagtccaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 gaagcgttaacgaggaaaaacaaagctggtttgttacctgcaggcgttattgaagtccaa 3039
Query: 447 gggagcttccatgaacatgaatgtatagatataaaattgggagtcagggattcagatgga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 gggagcttccatgaacatgaatgtatagatataaaattgggagtcagggattcagatgga 3099
Query: 507 aatttggataaatccgttgcactgaaaacagtaggtagggctcgttgcaactatacaagc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 aatttggataaatccgttgcactgaaaacagtaggtagggctcgttgcaactatacaagc 3159
Query: 567 acagagttatcaaaaattaaaggtctgcaaagtgatcagattgaagatattctatgctat 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3160 acagagttatcaaaaattaaaggtctgcaaagtgatcagattgaagatattctaggctat 3219
Query: 627 gctgatagtgaatacgtagctcatagggaaaanttagcattccctcctcattaacctaaa 686
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3220 gctgatagtgaatacgtagctcatagggaaaatttagcattccctcctcattaacctaaa 3279
Query: 687 gtgaatgaaaatatactttacatgttacgtttaactctcatacacgtagccctttaataa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 gtgaatgaaaatatactttacatgttacgtttaactctcatacacgtagccctttaataa 3339
Query: 747 aagcatatatagataattcgacatcttgcatcaatttatatatatttacgggccatattg 806
||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 3340 aagcatatatagataatcgaacatcttgcatcaatttatatatatatac-ggccatattg 3398
Query: 807 agattttataaaaatattatttattctgcgctcaagcttcacaaagaaacacttctattt 866
||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||| ||
Sbjct: 3399 agattttataaaaatatta-ttaatctgcgctcaggcttcacaaagaaacac-tctaatt 3456
Query: 867 ttggcaggattattaaatat 886
|||| |||||||||||||||
Sbjct: 3457 ttgg-aggattattaaatat 3475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6891
Number of Sequences: 1807
Number of extensions: 6891
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)