BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC02RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 1273 0.0
>3x_Contig1705
Length = 16734
Score = 1273 bits (642), Expect = 0.0
Identities = 706/722 (97%), Gaps = 4/722 (0%)
Strand = Plus / Plus
Query: 44 cttttttcctctcggagttaagagaatggatatatatgtgaataaatgtctacatcaagt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11444 cttttttcctctcggagttaagagaatggatatatatgtgaataaatgtctacatcaagt 11503
Query: 104 tcatacttctagctgttaatactggaaagtaaagaggctagcctttgctaattgaccgac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11504 tcatacttctagctgttaatactggaaagtaaagaggctagcctttgctaattgaccgac 11563
Query: 164 aaataaagacaacatctcacaaatccaggactaatgactacagcaactgctgctccaaaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11564 aaataaagacaacatctcacaaatccaggactaatgactacagcaactgctgctccaaaa 11623
Query: 224 ttactgtttctgcaaggcttcttacaaaatggtaaagtcttcagtgagaagtcttctggt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11624 ttactgtttctgcaaggcttcttacaaaatggtaaagtcttcagtgagaagtcttctggt 11683
Query: 284 attagaaagctactgaagaaatctaatgttcaatgtgattacatggatgcgccagtgatc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11684 attagaaagctactgaagaaatctaatgttcaatgtgattacatggatgcgccagtgatc 11743
Query: 344 cttgaaaagaaagacttgcctttcgaaatggacgatgcaaagtggcaagaaacccttaat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11744 cttgaaaagaaagacttgcctttcgaaatggacgatgcaaagtggcaagaaacccttaat 11803
Query: 404 gcaggtgttaacagagcatggttctatcatagcgacatctcatctgaattggatttaagc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11804 gcaggtgttaacagagcatggttctatcatagcgacatctcatctgaattggatttaagc 11863
Query: 464 ccagctattgaagctgtcactaaatatatcaaggataatggtccatacgacggtattgtt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11864 ccagctattgaagctgtcactaaatatatcaaggataatggtccatacgacggtattgtt 11923
Query: 524 gggtttagtcaaggtgctgcattggcttctatcatcactaacaaaatcaccgaattggtc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11924 gggtttagtcaaggtgctgcattggcttctatcatcactaacaaaatcaccgaattggtc 11983
Query: 584 ccatctcatcctcagttcaaggtgtccttgttgatcgctgc-tactcttttactgaacca 642
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 11984 ccatctcatcctcagttcaaggtgtccttgttgatcgctgcttactctttcactgaacca 12043
Query: 643 gattcagaaaatgatggacaattaagaatttcttaaaaattccaagaattctttcaaacc 702
||| |||||||||| |||||||||||||| ||| |||||||||||| ||||||||||| |
Sbjct: 12044 gatccagaaaatgagggacaattaagaatctctcaaaaattccaag-attctttcaaa-c 12101
Query: 703 ctatggatgaccggcctaccaaaatgctgtttgtttaatggacccgaatatatggctgtt 762
||||||||||||| ||||||| ||||||||||||| |||| ||| | |||||||||||
Sbjct: 12102 ctatggatgaccgtactaccaagatgctgtttgttt-atggtaccgcagatatggctgtt 12160
Query: 763 cc 764
||
Sbjct: 12161 cc 12162
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8834
Number of Sequences: 1807
Number of extensions: 8834
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)