BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC03FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1411 1513 0.0
>3x_Contig1411
Length = 7271
Score = 1513 bits (763), Expect = 0.0
Identities = 817/834 (97%), Gaps = 1/834 (0%)
Strand = Plus / Minus
Query: 88 aaactgcatgcttagatagcgtcccaatttcctcttcgcctccgtggcttttacaatgtc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2556 aaactgcatgcttagatagcgtcccaatttcctcttcgcctccgtggcttttacaatgtc 2497
Query: 148 tgctttgaaataactataatataaaataataatttaataaactaatgatgttattgtaca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 tgctttgaaataactataatataaaataataatttaataaactaatgatgttattgtaca 2437
Query: 208 tacgatcccccaaatctcagtttaacgataagtatcaagaagaaacactgatccggacag 267
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2436 tacgatcccccaaaactcagtttaacgataagtatcaagaagaaacactgatccggacag 2377
Query: 268 ttctgtaagccagcctctcaaacgcttggttcacaacatcaactataccctgtacaatta 327
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2376 ttctgtaagccagcctctcaaacgcttggttcacaacagcaactataccctgtacaatta 2317
Query: 328 ctgcttgtcgtaggtgtattgtgtcattgtgcttttctcaacatcgattttaaaggttca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 ctgcttgtcgtaggtgtattgtgtcattgtgcttttctcaacatcgattttaaaggttca 2257
Query: 388 aatgtcaaaaaacgtcaaaaagatggcatcttgccttatactagctattactcagataaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 aatgtcaaaaaacgtcaaaaagatggcatcttgccttatactagctattactcagataaa 2197
Query: 448 cggatgcaagttttagggacaggaaacattaagatcagaagctgaaagtactggtcatgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 cggatgcaagttttagggacaggaaacattaagatcagaagctgaaagtactggtcatgg 2137
Query: 508 aattcggacacgatgcaaaacgtgtcagcaaaagatctttgttaggaaactatcttgtga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 aattcggacacgatgcaaaacgtgtcagcaaaagatctttgttaggaaactatcttgtga 2077
Query: 568 agaagtacgagaatgtatttgcatcgatagacaatgctgttcctccatgggacagggaaa 627
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2076 agaagtacgagaatgtatttgcatcgatagacaatgctgttcctccaggggacagggaaa 2017
Query: 628 agttgctatcgaataaagacttggtgcaaggaatagcgacctctttatttgatgctacct 687
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2016 agttgctatcgaataaggacttggtgcaaggaatagcgacctctttatttgatgctacct 1957
Query: 688 gngaaaggttcaagacgatgagataagatgatgcgaagacaattgacgatgattttcaag 747
| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1956 gggaaaggttcaagacgatgagagaagatgatacgaagacaattgacgatgattttcaag 1897
Query: 748 agtgtatcaacaacgaaacagatctcgagagtaatgatagtttctggaaagatgagaatt 807
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1896 agtatatcaacaacgaaacagatctcgagagtaatgatagtttctggaaggatgagaatt 1837
Query: 808 ttagacaggagtatgagatcagatccgcttcttctgaataggagcgggagaaaccggatg 867
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1836 ttagacaggagtatgagatcagatccgcttcttctgaagaggagcgggagaaaccgaatg 1777
Query: 868 tcaacacgtttttgataaagcaagc-aaggataccgttggagaaacaagggaac 920
|||| |||| | ||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct: 1776 tcaagacgtctctgagaaagcaagcaaaggataccgttgaagaaacaagggaac 1723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6351
Number of Sequences: 1807
Number of extensions: 6351
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)