BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC03RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig689 1340 0.0
>3x_Contig689
Length = 3037
Score = 1340 bits (676), Expect = 0.0
Identities = 727/740 (98%), Gaps = 3/740 (0%)
Strand = Plus / Minus
Query: 44 cgttgaatacaccagtttgtttgtttgtgacaatgttgtccaattggaaaataagttcca 103
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cgttgaagacaccagtttgtttgtttgtgacaatgttgtccaattggaaaataagttcca 880
Query: 104 gagggtcatcgctatcttggaacaatgagatatattgagttatatctttcgatgactcac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gagggtcatcgctatcttggaacaatgagatatattgagttatatctttcgatgactcac 820
Query: 164 tgacaatggtagcctcatcataaggttccacggtagaagtcctccaaacagtaacgttgt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tgacaatggtagcctcatcataaggttccacggtagaagtcctccaaacagtaacgttgt 760
Query: 224 tgataaaaatgtgacctaaacgatcgtgctgtatcccagtaatatttgtcgagagttcca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tgataaaaatgtgacctaaacgatcgtgctgtatcccagtaatatttgtcgagagttcca 700
Query: 284 agatgatcttattataaggggaaccagtgtatggcttaaacgacgcctgagctggatgac 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agatgatcttattataaggggaaccagtgtatggcttaaacgacgcctgagctggatgac 640
Query: 344 cccaagaatcgccaaacgagtaggataagaggtgttcagtatggactggatcatgaagcg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cccaagaatcgccaaacgagtaggataagaggtgttcagtatggactggatcatgaagcg 580
Query: 404 gtaattgtttaatcgttatttcaaatgacgtttcaacgtctggatgaacgtccagctggt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gtaattgtttaatcgttatttcaaatgacgtttcaacgtctggatgaacgtccagctggt 520
Query: 464 gatgattacaagagaagttaccaaagaataaccctttatgataaccgaataaaagaaggg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gatgattacaagagaagttaccaaagaataaccctttatgataaccgaataaaagaaggg 460
Query: 524 aaagagccaaaaagaaatggaaaaacttgacaaatctagtcttcttcctcttaccgtcgt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaagagccaaaaagaaatggaaaaacttgacaaatctagtcttcttcctcttaccgtcgt 400
Query: 584 tcccactctcattcttttctacatcgtacttccagtaccctgtgtccttttcagcatcaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcccactctcattcttttctacatcgtacttccagtaccctgtgtccttttcagcatcaa 340
Query: 644 tcgattctatgtaagcaagatgtttccctgcatcagtagactttggttttttattctcgc 703
||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |||||
Sbjct: 339 tcgattctatgtaagcaggaggttcccctgcatcagtagactttggttttttatcctcgc 280
Query: 704 aaaccatttggtttcatatattcatctcattcccctttagtacccatttcttaccacacc 763
||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||| |
Sbjct: 279 aaaccatttggttccatatattcatctcattcccc-ttagtacccatatc-taccaacac 222
Query: 764 ttcaattgccttgtcctggg 783
|||||||| |||||||||||
Sbjct: 221 ttcaattg-cttgtcctggg 203
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7518
Number of Sequences: 1807
Number of extensions: 7518
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)