BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC04FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig859 1465 0.0
>3x_Contig859
Length = 2084
Score = 1465 bits (739), Expect = 0.0
Identities = 792/807 (98%), Gaps = 2/807 (0%)
Strand = Plus / Minus
Query: 86 ttccacaaaaggaaaggtaggtacgtgcgaaatgatctgaggcatcaccacaacaaacca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 ttccacaaaaggaaaggtaggtacgtgcgaaatgatctgaggcatcaccacaacaaacca 1520
Query: 146 ggtattttactagcagccggctgtttctggtgcgcccttgtgcctcatgtcatttatgaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1519 ggtattttactagcagccggctgtttctggtgcgcccttgtgcctcatgtcatttatgaa 1460
Query: 206 ggtaataataactaatagcaatatgttgttgattagatatctttttttttttcgtaaatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 ggtaataataactaatagcaatatgttgttgattagatatctttttttttttcgtaaatt 1400
Query: 266 gataggcgtatatatctctatgttttgttacatttgactaattaatgttcagaggctttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 gataggcgtatatatctctatgttttgttacatttgactaattaatgttcagaggctttg 1340
Query: 326 attttgtcgtacatcgccaggagtttggaagatgggacatctcttggccagtaatatgca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 attttgtcgtacatcgccaggagtttggaagatgggacatctcttggccagtaatatgca 1280
Query: 386 gtgaaagaccataaatgtcttttatatttttctggagaggtcttagacgagtccttcttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 gtgaaagaccataaatgtcttttatatttttctggagaggtcttagacgagtccttcttg 1220
Query: 446 tgcgattcgatgtagtcaccaacacgtttcaattccttcttcaataggttagcccattgc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 tgcgattcgatgtagtcaccaacacgtttcaattccttcttcaataggttagcccattgc 1160
Query: 506 ttacgttcaagaccgtctcctccagatcttagacgtttgagtgagctacggacgtttgtc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 ttacgttcaagaccgtctcctccagatcttagacgtttgagtgagctacggacgtttgtc 1100
Query: 566 atcgttttcttacactcttcttcgtccatactgtcgtattctttgtcaggaagacggata 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 atcgttttcttacactcttcttcgtccatactgtcgtattctttgtcaggaagacggata 1040
Query: 626 tcggcttttggtgccaacggtatgtctttacctttcctctgctgttttttcgatccgacg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 tcggcttttggtgccaacggtatgtctttacctttcctctgctgttttttcgatccgacg 980
Query: 686 acaggcgtaccagatcttgatgatgggtgttgatggtgatgggccctgccacgctttgtt 745
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 979 acaggcgtaccagatcttgatgatggttgttgatggtgatgggccttgccacgctttgtt 920
Query: 746 tcggagctattgtctggtgtagagtccttgcccggtaagttaacactattgcccgtcact 805
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||
Sbjct: 919 tcggagctattgtctggtgtagagtccttgccggttaagttaacactattg-ccgtcact 861
Query: 806 gggggtcccagcggtattgggcattttctttcccattgctggtcccagcattagtaacag 865
||||| ||||||||| ||||||||||| |||||||||||| |||||||| ||||| |||
Sbjct: 860 tggggtaccagcggta-tgggcattttcgttcccattgctgttcccagcagtagtagcag 802
Query: 866 acttctttgtgttacatttgttttgct 892
||||||||| |||| |||||||||||
Sbjct: 801 acttctttggtttacgtttgttttgct 775
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,901
Number of Sequences: 1807
Number of extensions: 10901
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)