BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC04RM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig534 1281 0.0
>3x_Contig534
Length = 2494
Score = 1281 bits (646), Expect = 0.0
Identities = 744/766 (97%), Gaps = 8/766 (1%)
Strand = Plus / Minus
Query: 46 caaagaaacggaaactctctgtatcggatgccgaggaagaagctggcaacgattcgacct 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1361 caaagaaacggaaactctctgtatcggatgccgaggaagaagctggcaacgattcgacct 1302
Query: 106 aacctcaggataacccctgttgcttatttccaatatcaaatgttcgaattaagtcatgat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1301 aacctcaggataacccctgttgcttatttccaatatcaaatgttcgaattaagtcatgat 1242
Query: 166 gatatacatataattaaagcgtcgcagaatccgtatgtatattacatatagacgatacat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1241 gatatacatataattaaagcgtcgcagaatccgtatgtatattacatatagacgagacag 1182
Query: 226 atatatagtcttttaacacttcatctgggaaaccagagtaaaagtcgctttatttttagg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 atatatagtcttttaacacttcatctgggaaaccagagtaaaagtcgctttatttttagg 1122
Query: 286 ttgtttttttcttggctggaaatgaatatagtgttgtttgtagttgttaaaatttcgttc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 ttgtttttttcttggctggaaatgaatatagtgttgtttgtagttgttaaaatttcgttc 1062
Query: 346 gtatgttactgaatatgcttttaaaattgatacggtcggcctctcaatcaattccatttt 405
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1061 gtatgttactgaatatgcttttaaaattgatacggtcggcctgtcaatcaattccatttt 1002
Query: 406 tagtggtgagtagagtagttacggtaaccaacaacctttcttctaccgataatttcaccc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 tagtggtgagtagagtagttacggtaaccaacaacctttcttctaccgataatttcaccc 942
Query: 466 aatgagtataaacctaacaattgcacgccgaaagcaccgatcttaacggcttggtccttt 525
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 aatgagtataaacctgacaattgcacgccgaaagcaccgatcttaacggcttggtccttt 882
Query: 526 tcaatgttcttcaacaagttaacaacttgttgaggcttatcagcataacccaaagcttgt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tcaatgttcttcaacaagttaacaacttgttgaggcttatcagcataacccaaagcttgt 822
Query: 586 ctgtacaatctggtgtagaccatttcaaagtccgaagaagtttggtggctgtagaccttc 645
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 821 ctgtacaatctggtgtagaccatttcaaagtccg-agaagtttggtggctgtagaccttc 763
Query: 646 cttagtggagacctgcttggataattcaacagttacctttaccgtagtaaacgggcttgg 705
||||||| |||||||||||||||||||| |||| ||| |||||||||||||||| |||||
Sbjct: 762 cttagtgtagacctgcttggataattcagcagtaacc-ttaccgtagtaaacggtcttgg 704
Query: 706 tcaacagtgattgtgtcttggggtgtaaaaaaagaaactaaaaattggacttctgg-aat 764
||||||||||||||||||| | |||| ||| ||||||||||| ||||||| ||||| |||
Sbjct: 703 tcaacagtgattgtgtctt-gtgtgtcaaagaagaaactaaagattggac-tctggaaat 646
Query: 765 aattgcttgctcgactttttatttattgaatacacttaaaccaacc 810
||||| |||||||| |||||| |||||||||||| ||||||||||
Sbjct: 645 cattgc-tgctcgac-ttttatctattgaatacac-taaaccaacc 603
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8086
Number of Sequences: 1807
Number of extensions: 8086
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)