BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC05RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig578 1354 0.0
>3x_Contig578
Length = 2054
Score = 1354 bits (683), Expect = 0.0
Identities = 833/871 (95%), Gaps = 9/871 (1%)
Strand = Plus / Minus
Query: 48 taccaacaatattctacgacatgtacagcccagatattttgatgaatcctcaaaatttga 107
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1341 taccaacaatattctacgacatgtacagcccagatattatgatgaatcctcaaaatttga 1282
Query: 108 tgagcaacggaaggccgaactttactaagagagaacttttagattgggatattaatgata 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 tgagcaacggaaggccgaactttactaagagagaacttttagattgggatattaatgata 1222
Query: 168 taaggtcgttactcataatagagtccttgaggcccgaatggaacgggaaacttcctacca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 taaggtcgttactcataatagagtccttgaggcccgaatggaacgggaaacttcctacca 1162
Query: 228 tagcattcaatcaactgcagggtaacaatggtacggaaccatctattcctgagttcaggt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 tagcattcaatcaactgcagggtaacaatggtacggaaccatctattcctgagttcaggt 1102
Query: 288 tccagttattaccactgaattccccagatgaattcatcatatcgacgttggtaagttctg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 tccagttattaccactgaattccccagatgaattcatcatatcgacgttggtaagttctg 1042
Query: 348 atctttatatcgaagctaatcttgactacgagtttaagctaaccagtgccaaatatacag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 atctttatatcgaagctaatcttgactacgagtttaagctaaccagtgccaaatatacag 982
Query: 408 tcaattcagctaggaaaagacacgaagagctaataggccatcacgaaccagtcatgcaac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tcaattcagctaggaaaagacacgaagagctaataggccatcacgaaccagtcatgcaac 922
Query: 468 tatcgaagcctgaatggagaaacattatagagaactacttacttaacattgtagttgagg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tatcgaagcctgaatggagaaacattatagagaactacttacttaacattgtagttgagg 862
Query: 528 cacaatgtagatttgatttcaagaaggcttgttctgagtacaaaaaatggaagttagatc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cacaatgtagatttgatttcaagaaggcttgttctgagtacaaaaaatggaagttagatc 802
Query: 588 aactgaaacaacaagctcttcaacaaaacatgattctttagcagcataatactgtaaaga 647
||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct: 801 aactgaaacaacaagctctccaacaaaacatgattcttcagcagcaaaatactgtaaaga 742
Query: 648 aacctaatatgccacctccatcaataatacccgaagaagtcttagatttcgctgctcaga 707
||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct: 741 aacctaatatgccacctccatcaataata-ccgaagaagtctaagaattcgctgctcaga 683
Query: 708 taggcactacttaagatactcttaaattcaagattcgaggaacatttggaacttgaacag 767
|||||||| ||||| ||||| ||| |||||| |||||||||| |||||||||||||||
Sbjct: 682 agggcactac-taagaaactctcaaa-tcaaga-tcgaggaacaattggaacttgaacag 626
Query: 768 caacaaggctttggcacagcaatcacaacaagcttctgtgccattagtcgaagttactac 827
|||| |||||||| ||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct: 625 caac-aggctttgcaacagcaacaacaacaagctcctgtgccattagtcgaagtacctac 567
Query: 828 gaaagtggtttttaacaaaagacaaataagtcatgggtcttggtcccattgtccactgga 887
|||||| || ||||||||||||| || |||||| |||| ||||||||||| | |||| |
Sbjct: 566 gaaagt-gtctttaacaaaagacgaa-aagtcaatggtc-tggtcccattgccaactgca 510
Query: 888 aatgttccaaaaacttaggttttgattggac 918
| ||| ||||| || ||||||| ||||||||
Sbjct: 509 agtgtaccaaagac-taggtttagattggac 480
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6508
Number of Sequences: 1807
Number of extensions: 6508
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)