BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC35ZC06FM1.SCF screened BAC_end (985 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1805 329 6e-90 >3x_Contig1805 Length = 19369 Score = 329 bits (166), Expect = 6e-90 Identities = 293/316 (92%), Gaps = 17/316 (5%) Strand = Plus / Minus Query: 86 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3311 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 3252 Query: 146 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3251 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 3192 Query: 206 tacaggtttgagagaacattgtgaacgcat-gtcg-ttgcacc-cag-ttatagaat--g 259 |||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||| Sbjct: 3191 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 3132 Query: 260 tcatgtc-acgtgtgtataatgtcg--atgattt-ctatt-gcctctgaaaa-cagtttc 313 ||||||| ||||||||||||||||| | ||||| ||||| ||||||||||| ||||||| Sbjct: 3131 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 3072 Query: 314 acttt-cgttgatttg-ttct-aacgtttt-cagaaaa-aaacaattaaaggctgaattg 368 ||||| |||||||||| |||| |||||||| ||||||| | |||| |||||||||||||| Sbjct: 3071 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 3012 Query: 369 caatgcatgcccgttc 384 | ||||||||| |||| Sbjct: 3011 cgatgcatgcctgttc 2996 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 43,605 Number of Sequences: 1807 Number of extensions: 43605 Number of successful extensions: 4945 Number of sequences better than 1.0e-20: 1 length of query: 985 length of database: 10,358,551 effective HSP length: 16 effective length of query: 969 effective length of database: 10,329,639 effective search space: 10009420191 effective search space used: 10009420191 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)