BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC06RM1.SCF screened BAC_end
(857 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 507 e-143
>3x_Contig1743
Length = 20172
Score = 507 bits (256), Expect = e-143
Identities = 320/336 (95%), Gaps = 4/336 (1%)
Strand = Plus / Plus
Query: 43 gctttgatttgcggtggtgttgttattggcatgatgttccatatatcgagtacattagct 102
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 19452 gctttgatttgcggtggtgttggtattggcatgatgttccatatatcgagtacattagct 19511
Query: 103 agtgtactcttcctatttgctccaccgctacttgttggcgcaaccatttacggtaacaag 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19512 agtgtactcttcctatttgctccaccgctacttgttggcgcaaccatttacggtaacaag 19571
Query: 163 attagagcaatctctagagaattacaacaggncctctggtaatcttaccaaagtcttata 222
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 19572 attagagcaatctctagagaattacaacagg-cctctggtaatcttaccaaagtcgcaga 19630
Query: 223 ggaacaactaagcgggattaaaactgtccaaatccttgttgcagaagggaaagaagtgca 282
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 19631 ggaacaactaagcgggattaaaactgtccaatcctttgttgcagaagggaaagaagtgca 19690
Query: 283 tcgctataacaacgctgtaagacaagtatttaaatgtttggaaagaaaggaagctttcac 342
|||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||
Sbjct: 19691 tcgctataacaacgctgtaagacaggtattt-aatg-ttggaaag-aaggaagctttcac 19747
Query: 343 aaatgcaacttttttcagtagtccaaaagggttggg 378
|||||| ||||||||||||||| |||| | ||||||
Sbjct: 19748 aaatgcgacttttttcagtagtacaaatgtgttggg 19783
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,467
Number of Sequences: 1807
Number of extensions: 28467
Number of successful extensions: 4265
Number of sequences better than 1.0e-20: 1
length of query: 857
length of database: 10,358,551
effective HSP length: 16
effective length of query: 841
effective length of database: 10,329,639
effective search space: 8687226399
effective search space used: 8687226399
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)