BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC07RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1061 0.0
>3x_Contig1497
Length = 11582
Score = 1061 bits (535), Expect = 0.0
Identities = 640/671 (95%), Gaps = 3/671 (0%)
Strand = Plus / Minus
Query: 41 aagctttaaccctttttaaaatcaggatctattcctgattttctacggcggatcgagtac 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9118 aagctttaaccctttttaaaatcaggatctattcctgattttctacggcggatcgagtac 9059
Query: 101 cgatcacccagttcaaagtacaatggcagcattacccaagagaattatcaaagtatgttg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9058 cgatcacccagttcaaagtacaatggcagcattacccaagagaattatcaaagtatgttg 8999
Query: 161 aaaatttttggaaacttacacgttcttttctatctgagtattaattaatagcgttataac 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8998 aaaatttttggaaacttacacgttcttttctatctgagtattaattaatagcgttataac 8939
Query: 221 taaccaagaaaaaaaaaaatatcatttacacaggaaactgaaaggttagtgagcgatccg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8938 taaccaagaaaaaaaaaaatatcatttacacaggaaactgaaaggttagtgagcgatccg 8879
Query: 281 gtccccggaatcactgcagaaccacatgaggataatttacgttatttccaagtgacgata 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8878 gtccccggaatcactgcagaaccacatgaggataatttacgttatttccaagtgacgata 8819
Query: 341 gagggtccgcagcaaagtccctatgaaaatggggtcttccaactagaattgttcctaccg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8818 gagggtccgcagcaaagtccctatgaaaatggggtcttccaactagaattgttcctaccg 8759
Query: 401 gatgattatccaatggaagcaccaaaggtaaggtttttgacaaaaatataccatcccaat 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8758 gatgattatccaatggaagcaccaaaggtaaggtttttgacaaaaatataccatcccaat 8699
Query: 461 atcgatcggttaggtagaatatgtctcgatgttttgaaaaaatattgggcacctgccctt 520
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 8698 atcgatcggttaggtagaatatgtctcgatgttttgaaaaataattggtcacctgccctt 8639
Query: 521 caaatcagaacagtactttttgccgtgcaagccctgctttcatcttcgaattcgaatgat 580
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 8638 caaatcagaacagtacttttgtccgtgcaagccttgcttgcatctccgaatccgaatgaa 8579
Query: 581 ccgttagctaatgacgtcgcttgagaattgatcaagcttgaagataccggatttgcaaag 640
||||||||||||||||||| |||| |||||||| ||||||||||| | ||| ||||
Sbjct: 8578 aagttagctaatgacgtcgctgaggaatggatcaagcatgaagataccgcaattgaaaag 8519
Query: 641 gcaaaagattgggac-aacttttcg-caaaccttcttaggatgaggaacccgc-aaagaa 697
|||||||| ||| | |||||| || ||||||| || ||||||||||||| || ||||||
Sbjct: 8518 gcaaaagaatggaccaaactttacgccaaacctactcaggatgaggaaccagcaaaagaa 8459
Query: 698 ttactcgaatt 708
| |||||||||
Sbjct: 8458 taactcgaatt 8448
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,691
Number of Sequences: 1807
Number of extensions: 20691
Number of successful extensions: 207
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)