BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC08FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1346 0.0
>3x_Contig1630
Length = 14771
Score = 1346 bits (679), Expect = 0.0
Identities = 753/767 (98%), Gaps = 8/767 (1%)
Strand = Plus / Plus
Query: 87 attacatgccatgttaggatcaggaataattgaagatgagtataatatgttcctttcatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10401 attacatgccatgttaggatcaggaataattgaagatgagtataatatgttcctttcatc 10460
Query: 147 aattcattcgaacatctcgaagggtagtagcagaaaactaatacaggaatttgcatcctc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10461 aattcattcgaacatctcgaagggtagtagcagaaaactaatacaggaatttgcatcctc 10520
Query: 207 agaacaaaagaaatcagttttaatttcaacggacataatggctagaggtatcgatataaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10521 agaacaaaagaaatcagttttaatttcaacggacataatggctagaggtatcgatataaa 10580
Query: 267 tgaaattactcatgtgataaactatgatctaccgatctcctctcaacaatatgttcatcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10581 tgaaattactcatgtgataaactatgatctaccgatctcctctcaacaatatgttcatcg 10640
Query: 327 ttgtggtagaactgcaagggctaatactgagggtatagcaattaaccttctagttggtaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10641 ttgtggtagaactgcaagggctaatactgagggtatagcaattaaccttctagttggtaa 10700
Query: 387 gggtgaacagaaattctggtcacaacatattgacactgacctcagtcgtgacattgatgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10701 gggtgaacagaaattctggtcacaacatattgacactgacctcagtcgtgacattgatgg 10760
Query: 447 ttatcaaccatctgcttaccttgacgaagaaaagttgtctgaattattctctattgaaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10761 ttatcaaccatctgcttaccttgacgaagaaaagttgtctgaattattctctattgaaga 10820
Query: 507 cactttgaaggatacgtacaagggttgtatcaaacaactccaaaccagcaaagaagcaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10821 cactttgaaggatacgtacaagggttgtatcaaacaactccaaaccagcaaagaagcaga 10880
Query: 567 cagtaaatagcatattatcactaaataagtaaaaagatcatagtaactgtaccccattct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10881 cagtaaatagcatattatcactaaataagtaaaaagatcatagtaactgtaccccattct 10940
Query: 627 tggggctcgtctaagtgatatttgagaaggcactaatgatcttatacttactatctattt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10941 tggggctcgtctaagtgatatttgagaaggcactaatgatcttatacttactatctattt 11000
Query: 687 tgcctcttctgatgagttgatcatgtgacatgttatttattgttcgagcagtgttttttc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11001 tgcctcttctgatgagttgatcatgtgacatgttatttattgttcgagcagtg-tttttc 11059
Query: 747 ctccactttaggacctttctttacccttaaattgatatggtgattgatccgttccagatc 806
|||||||||| || ||||||||| |||||||||||||| ||||||||| |||| ||||
Sbjct: 11060 ctccacttta-gaactttcttta-ccttaaattgatat-gtgattgat-cgtt-cagaat 11114
Query: 807 cactgaaacacctataaacctttcaagtacccttaggcaagttaaac 853
|||||||||| ||||||||||| ||||| ||||||||| |||||||
Sbjct: 11115 cactgaaaca-ctataaaccttcaaagta-ccttaggcaggttaaac 11159
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6751
Number of Sequences: 1807
Number of extensions: 6751
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)