BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC08RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1243 0.0
>3x_Contig1676
Length = 15800
Score = 1243 bits (627), Expect = 0.0
Identities = 668/675 (98%), Gaps = 5/675 (0%)
Strand = Plus / Plus
Query: 49 aaaaataaatcgttaagggcatgagtagactatataatctacatctcgtatataagattt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 aaaaataaatcgttaagggcatgagtagactatataatctacatctcgtatataagattt 1750
Query: 109 aatctcttattaaaagaacagaatccgaacaccaagtaccagtgtatggatgcatttgaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1751 aatctcttattaaaagaacagaatccgaacaccaagtaccagtgtatggatgcatttgaa 1810
Query: 169 gttaagtagcgagcggaaccatgcaggagcggcaaaaggaatccttgcattctaaagcga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1811 gttaagtagcgagcggaaccatgcaggagcggcaaaaggaatccttgcattctaaagcga 1870
Query: 229 tcctcgaaagagtaaaaccttaatcggagctttacaggttttctagtgatatttgccgag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1871 tcctcgaaagagtaaaaccttaatcggagctttacaggttttctagtgatatttgccgag 1930
Query: 289 agaagtgtaaaacatgttgacaatcataaaagaagagtacatgtgcacattcacaggtct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1931 agaagtgtaaaacatgttgacaatcataaaagaagagtacatgtgcacattcacaggtct 1990
Query: 349 aaagttcttagggtatcaaaaaaaaaaaaaacatttcgacaaagctggagcaacataatc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1991 aaagttcttagggtatcaaaaaaaaaaaaaacatttcgacaaagctggagcaacataatc 2050
Query: 409 tcacttgttcttagacttctttcatactgatctgtaacgcggtttctggaacttgaccgc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2051 tcacttgttcttagacttctttcatactgatctgtaacgcggtttctggaacttgaccgc 2110
Query: 469 tagagaattccttctatggtgatgatttgtgcatggagaagacaaatcgagtgaacattg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2111 tagagaattccttctatggtgatgatttgtgcatggagaagacaaatcgagtgaacattg 2170
Query: 529 cgaagaatcatcttcagtgcatttggtggggaaatcgatcttgcatgcgtgcattgaatt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171 cgaagaatcatcttcagtgcatttggtggggaaatcgatcttgcatgcgtgcattgaatt 2230
Query: 589 ccttggagaaacaggttgttttttcagt-atggaccttgattcagaaggcgaattgctat 647
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2231 ccttggagaaacaggttg-tttttcagtaatggaccttgattcagaaggcgaattgctat 2289
Query: 648 tgtattcgtcattattagtcgtaatcg-aattgtagtcgaaatattcattgctagttttt 706
|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 2290 tgtattcgtcatta-tagtcgtaatcgtaattgtagtcgtaatattcattgctagttttt 2348
Query: 707 tggcttgccatcatt 721
| ||||| |||||||
Sbjct: 2349 t-gcttgtcatcatt 2362
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,699
Number of Sequences: 1807
Number of extensions: 14699
Number of successful extensions: 331
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)