BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC09FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1756 1447 0.0
>3x_Contig1756
Length = 16846
Score = 1447 bits (730), Expect = 0.0
Identities = 805/821 (98%), Gaps = 8/821 (0%)
Strand = Plus / Minus
Query: 86 caattgatgcccgtcgaggctattttcctctcttatgcagtgccggtattgaagatcaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14161 caattgatgcccgtcgaggctattttcctctcttatgcagtgccggtattgaagatcaca 14102
Query: 146 ttgcaacaattaatggtttcgttggtactggaaccgaaaagtttccaagacatcaagaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14101 ttgcaacaattaatggtttcgttggtactggaaccgaaaagtttccaagacatcaagaaa 14042
Query: 206 ttaattcatcaatatgtcgcgtaccatcattacaggtccaaagggtggtgtgtacgatcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14041 ttaattcatcaatatgtcgcgtaccatcattacaggtccaaagggtggtgtgtacgatcg 13982
Query: 266 gggataaaatttggttgcgaatacttattatacagaagaggaccccctttccaacatgcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13981 gggataaaatttggttgcgaatacttattatacagaagaggaccccctttccaacatgcg 13922
Query: 326 gagtatggaatcatggttttggatgcaaaccagtcaaatgattacacttggtattcaagc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13921 gagtatggaatcatggttttggatgcaaaccagtcaaatgattacacttggtattcaagc 13862
Query: 386 gctgccagagtcgtgggcggagccaagaaacagtttgtattatgctacgttgaacaactc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13861 gctgccagagtcgtgggcggagccaagaaacagtttgtattatgctacgttgaacaactc 13802
Query: 446 atacctgaagatgacttaatggaactttggaagcaatcaaagtacgatgagcttttcaga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13801 atacctgaagatgacttaatggaactttggaagcaatcaaagtacgatgagcttttcaga 13742
Query: 506 aactttaaaatccatgaattgttatacaaaagatgggttgcaggtaagaacagagattaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13741 aactttaaaatccatgaattgttatacaaaagatgggttgcaggtaagaacagagattaa 13682
Query: 566 ctgttccgaaccggtaacgatcttttccgcgaagaactcaaacgagtaaaaataaaccca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13681 ctgttccgaaccggtaacgatcttttccgcgaagaactcaaacgagtaaaaataaaccca 13622
Query: 626 tgctagttaattgcattaaatacagtaatggtctggattatatgtctctatatatattat 685
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13621 tgctagttaattgcattaaatacagtaatggtctgtattatatgtctctatatatattat 13562
Query: 686 cagtttatgtttgtaatagtattatggccgatacagaaag-aagatctctcattct-aat 743
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 13561 cagtttatgtttgtaatagtattatggccgatacagaaagaaagatctctcattctaaat 13502
Query: 744 cttgccgtcatatacattcaagatccattcacattctctgattccctcagtacgttgagc 803
||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||||
Sbjct: 13501 cttgccgtcatatacatccaagatccatccacaatctctgaatccctcagtacgttgagc 13442
Query: 804 tggttccattactggatcatcataaatctctaccagtgtttggatcatgtgtttgctggg 863
|||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 13441 tggtcccattactggatcatcataaatctctaccagtg-ttggatcatgtg-ttgctgg- 13385
Query: 864 cttttgaaatgcaaattacctggaccggttgggtagattgc 904
||||| ||||||||||||| |||| ||||||||||||||
Sbjct: 13384 -ctttgagatgcaaattacct-gacc-gttgggtagattgc 13347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6471
Number of Sequences: 1807
Number of extensions: 6471
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)