BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC09RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1168 0.0
>3x_Contig1775
Length = 26320
Score = 1168 bits (589), Expect = 0.0
Identities = 683/704 (97%), Gaps = 8/704 (1%)
Strand = Plus / Plus
Query: 48 ccctaacttgattcttgaaacacaggccgagttcgataagataataaaagactatacatt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6177 ccctaacttgattcttgaaacacaggccgagttcgataagataataaaagactatacatt 6236
Query: 108 gaaatggctgaaaagacaaatgtctgtcgaatttgaccaaacaagaaacatccaaactgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6237 gaaatggctgaaaagacaaatgtctgtcgaatttgaccaaacaagaaacatccaaactgg 6296
Query: 168 agacaatgtcgatcagatctgtgatattcgaattctacgccatgaagattcttcaaaacg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6297 agacaatgtcgatcagatctgtgatattcgaattctacgccatgaagattcttcaaaacg 6356
Query: 228 ggcgttattagtaacacctactgaattgattctattaaatttgcagacacagaaaattga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6357 ggcgttattagtaacacctactgaattgattctattaaatttgcagacacagaaaattga 6416
Query: 288 tgtccgttcaccacttccattgccatcgcataaggtggcaatgacccttacaagacacaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6417 tgtccgttcaccacttccattgccatcgcataaggtggcaatgacccttacaagacacaa 6476
Query: 348 cactgatccagccgctctaccactcaaaaaacagcagtacaagaatccaagacttcaatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6477 cactgatccagccgctctaccactcaaaaaacagcagtacaagaatccaagacttcaatt 6536
Query: 408 ggtccctatatctgctggacagccatctctatctactgcaccggtccaaaatatcacaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537 ggtccctatatctgctggacagccatctctatctactgcaccggtccaaaatatcacaga 6596
Query: 468 agatgttttctttctattgccgttatgccaaacagtcacagttttcattgagacagccgt 527
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6597 agaggttttctttctattgccgttatgccaaacagtcacagttttcattgagacagccgt 6656
Query: 528 cgcttct-atacagactcaattctgagcccagacggtcgctctcattccttggccgtgga 586
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6657 cgcttctaatacagactcaattctgagcccagacggtcgctctcattccttggccgtgga 6716
Query: 587 tcatcttncacattccgctgatctgacaagagaaatacatgacttgcattcgcacacaat 646
||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct: 6717 tcatcttccacattccgctgatctgacaggagaatcacatgacttgcatcggcacacaat 6776
Query: 647 tcgaatagttttaggttcatcttgaaaccagaaaacccaggataaatgcaccgtgggttt 706
|||||||| ||||||||||||| ||||||||||| ||| || ||||||| ||| |||||
Sbjct: 6777 tcgaatag-tttaggttcatctgaaaaccagaaaa-ccaagaaaaatgca-cgt-ggttt 6832
Query: 707 tgtacttggtatttccaggaataagcatgtaaagcgccacagcc 750
||||| ||||| ||||||||| ||||||| ||||||| ||||||
Sbjct: 6833 tgtac-tggtaattccaggaa-aagcatg-aaagcgcaacagcc 6873
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6520
Number of Sequences: 1807
Number of extensions: 6520
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)