BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZC10FM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig383                                                          892   0.0  

>3x_Contig383 
          Length = 1103

 Score =  892 bits (450), Expect = 0.0
 Identities = 475/482 (98%), Gaps = 1/482 (0%)
 Strand = Plus / Minus

                                                                       
Query: 86  tcctttggtgactaacaagtcatcagtagtctcttttaaagttgattgaagctctccatt 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tcctttggtgactaacaagtcatcagtagtctcttttaaagttgattgaagctctccatt 922

                                                                       
Query: 146 catcacagtcaacttgtttaatttcaacaaaatttcatcacgagattgttttattccgtt 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 catcacagtcaacttgtttaatttcaacaaaatttcatcacgagattgttttattccgtt 862

                                                                       
Query: 206 catttctgttgtcaaagagtcaataatttgatcagcttcaactttcgcacttttcaatga 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 catttctgttgtcaaagagtcaataatttgatcagcttcaactttcgcacttttcaatga 802

                                                                       
Query: 266 atcgcatttttcatttaaggcatattcaatgcttgcccagtttttgttgctttcattcaa 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atcgcatttttcatttaaggcatattcaatgcttgcccagtttttgttgctttcattcaa 742

                                                                       
Query: 326 ttcgtgctgtgctgctttgtattgggacataagtttgctgtacgcgtcatttgttgtatt 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcgtgctgtgctgctttgtattgggacataagtttgctgtacgcgtcatttgttgtatt 682

                                                                       
Query: 386 gtcagtggtagttgagtcgccagattttgtattgatattttctaaatcgattctcaattg 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcagtggtagttgagtcgccagattttgtattgatattttctaaatcgattctcaattg 622

                                                                       
Query: 446 ttccaaccgtatctctaacctgtcaacttcttcctttgaagttttcttcgagtgctttat 505
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 ttccaaccgtatctctaacctgtcaacttcttcctttgaag-tttcttcgagtgctttat 563

                                                                       
Query: 506 attttgattcgaacgtaccgtgcattttgtcctcgtgctctcttatttgcgataattcag 565
           |||||||||||||||| |  ||||||| ||| ||||||||||||||||| ||||||||||
Sbjct: 562 attttgattcgaacgtccgttgcatttggtcttcgtgctctcttatttgtgataattcag 503

             
Query: 566 tg 567
           ||
Sbjct: 502 tg 501


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,181
Number of Sequences: 1807
Number of extensions: 14181
Number of successful extensions: 100
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)