BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC35ZC10RM1.SCF screened BAC_end (861 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1492 414 e-115 >3x_Contig1492 Length = 8701 Score = 414 bits (209), Expect = e-115 Identities = 257/265 (96%), Gaps = 6/265 (2%) Strand = Plus / Minus Query: 255 gtctagagaaaaagaaagacattacttt-cttatggcagaaatctagtttcctcttcccc 313 |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct: 8701 gtctagagaaaaagaaagacattacttttcttatggcagaaatctagtt-cctctccccc 8643 Query: 314 aacagtccgaatgtttgggacaggttgtcatcagaaattgcttgcagagtctcatcatct 373 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 8642 aacagtccgaatgtttgggacaggttgtcatcagaaattgct-gcagagtctcatcatct 8584 Query: 374 ggacaaaatagaataactcctcttcatttaagtcaaaagctagtcgtgtgtgactccttg 433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8583 ggacaaaatagaataactcctcttcatttaagtcaaaagctagtcgtgtgtgactccttg 8524 Query: 434 acgaaggtacaaaaggcaatctttttgtgttcatggaatgcggacgctatt-atgcatta 492 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 8523 acgaaggtacaaaaggcaatctttttgtgtccatggaatgcggacgctattaatgcatta 8464 Query: 493 aaa-ggtg-ttttagatgagaatat 515 ||| |||| |||||||||||||||| Sbjct: 8463 aaagggtgtttttagatgagaatat 8439 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,841 Number of Sequences: 1807 Number of extensions: 13841 Number of successful extensions: 112 Number of sequences better than 1.0e-20: 1 length of query: 861 length of database: 10,358,551 effective HSP length: 16 effective length of query: 845 effective length of database: 10,329,639 effective search space: 8728544955 effective search space used: 8728544955 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)