BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC11RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1522 999 0.0
>3x_Contig1522
Length = 7810
Score = 999 bits (504), Expect = 0.0
Identities = 541/551 (98%), Gaps = 2/551 (0%)
Strand = Plus / Plus
Query: 43 gcttgtcaagcggttttcattgcaccttgttc-catagttggcatttcaagtgcattaga 101
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 6386 gcttgtcaagcggttttcattgcaccttgttcacatagttggcatttcaagtgcattaga 6445
Query: 102 caacttgtatcaaaaacatatcctcaatttgtttgtcctaactgcagagcagtttgtgat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6446 caacttgtatcaaaaacatatcctcaatttgtttgtcctaactgcagagcagtttgtgat 6505
Query: 162 ttataggccgacttggatagtgacgatgaagatgaagatgaggaatttgtagatgaagat 221
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6506 ttagaggccgacttggatagtgacgatgaagatgaagatgaggaatttgtagatgaagat 6565
Query: 222 gtttattcaccgaacgagactcttgataccaggtcgagactatccccaatcaatgatgag 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6566 gtttattcaccgaacgagactcttgataccaggtcgagactatccccaatcaatgatgag 6625
Query: 282 ggcacatctttctttccgagtatgaacagagatagcagaataacacatccaccaatacca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6626 ggcacatctttctttccgagtatgaacagagatagcagaataacacatccaccaatacca 6685
Query: 342 gaacaggaagacgaatactgtaacgacgtcgatggcgatattcgcatgctcaactgaaca 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6686 gaacaggaagacgaatactgtaacgacgtcgatggcgatattcgcatgctcaactgaaca 6745
Query: 402 ggccagtttcagatgttctgaaagttattaatcttaaagcacatatatatcatagncata 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6746 ggccagtttcagatgttctgaaagttattaatcttaaagcacatatatatcatagtcata 6805
Query: 462 tatatatatatatattcaattctttcagtattttccgta-ttttttttcttacaacgtag 520
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6806 tatatatatatatattcaattctttcagtattttccgtatttttttttcttacaacgtag 6865
Query: 521 tcctcgtcggggattgggatgggttaaatgtacctaaagcggtttgtattgggaagtaaa 580
|||||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 6866 tcctcgtcggtgattgtgatggtataaatgtacctaaagcggtttgtaatgggaagtaaa 6925
Query: 581 actggtttgtt 591
|||||| ||||
Sbjct: 6926 actggtatgtt 6936
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,665
Number of Sequences: 1807
Number of extensions: 23665
Number of successful extensions: 4161
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)