BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZC12FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1346 0.0
>3x_Contig1738
Length = 21411
Score = 1346 bits (679), Expect = 0.0
Identities = 801/837 (95%), Gaps = 4/837 (0%)
Strand = Plus / Plus
Query: 85 aacggaggagaaaacgtcactaaagcacaacaatggcacatattggcgaaaaagatgaat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9148 aacggaggagaaaacgtcactaaagcacaacaatggcacatattggcgaaaaagatgaat 9207
Query: 145 atacaaggaccaaatgctggagaagaattggcaaagacgtactacagatatttactaccg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9208 atacaaggaccaaatgctggagaagaattggcaaagacgtactacagatatttactaccg 9267
Query: 205 tacgaaaagtatttgttgaccccagaaggtattaaagaaactcaaaccaatcgtatcatg 264
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9268 tacgaaaagtacttgatgaccccagaaggtattaaagaaactcaaaccaatcgtatcatg 9327
Query: 265 ttacagcaattacttcaggacattataagaaacattagaacgaatacaccgcagttccaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9328 ttacagcaattacttcaggacattataagaaacattagaacgaatacaccgcagttccaa 9387
Query: 325 ccgcaggtgcaaaatcagtcttttatgcagggtcaaaacgtaatacaaccggatttacaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9388 ccgcaggtgcaaaatcagtcttttatgcagggtcaaaacgtaatacaaccggatttacaa 9447
Query: 385 atgaagcaacaacagattcctaaggctcaaggcaaaacaaagaacaccgtcccaaaacaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9448 atgaagcaacaacagattcctaaggctcaaggcaaaacaaagaacaccgtcccaaaacaa 9507
Query: 445 gcaaaacctaaacagcctaagaagccaagagtgaagaagaagactaagaaagaactagaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9508 gcaaaacctaaacagcctaagaagccaagagtgaagaagaagactaagaaagaactagaa 9567
Query: 505 caggaaagaaaacaaatggaagagctgcaaaagcgtcaacaacaagaagcggagcaacaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9568 caggaaagaaaacaaatggaagagctgcaaaagcgtcaacaacaagaagcggagcaacaa 9627
Query: 565 cagcagcagcaaaagctcatattcgaacaacaattgaagaaacaacaggaaattattttg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9628 cagcagcagcaaaagctcatattcgaacaacaattgaagaaacaacaggaaattattttg 9687
Query: 625 aaacgtcgtgaagagcaaattaagatgcttccgaatgtgtataagagaacgatggccatg 684
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
Sbjct: 9688 aaacgtcgtgaagagcaaattaagaagcttccgaaggtgtataagagaacgatggccagg 9747
Query: 685 cattatagttccaccacaagatccatcaccacgncaaatgggtatgatnattcaaaagat 744
||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| |
Sbjct: 9748 cattatagtcccaccacaagagccatcaccacgcaaaatgggtatgatatttcaaagatt 9807
Query: 745 tcagctcttggtgagatgatacatatttttaaacccatcttcctctttgcgcccggattt 804
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 9808 tcagctcttggtgagatgatacataattttaaacccatcttcctctttgcg-ccggagtt 9866
Query: 805 gggtgtcgtcataatcaatgc-attgcaatggcatttacaaattcttaattacccggaag 863
|||||||||| |||||||| |||||||| ||| ||||||| | |||| |||||||||
Sbjct: 9867 tggtgtcgtcaatatcaatgcaattgcaat-gcagttacaaagttctaataacccggaag 9925
Query: 864 ttaataccggactaaaactcattattagatttaagcttcgaaaacactttattaatt 920
| ||||||| ||| |||||||||||||| | | |||| ||| |||||||||| ||||
Sbjct: 9926 tcaataccgcact-aaactcattattagttattagctccgataacactttatcaatt 9981
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8253
Number of Sequences: 1807
Number of extensions: 8253
Number of successful extensions: 120
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)