BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC35ZC12RM1.SCF screened BAC_end (930 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig928 1334 0.0 >3x_Contig928 Length = 1948 Score = 1334 bits (673), Expect = 0.0 Identities = 728/744 (97%), Gaps = 2/744 (0%) Strand = Plus / Plus Query: 49 aagtgtatatttttatgatattacctatacaatactttctaaatgaacagcatagtcaat 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 aagtgtatatttttatgatattacctatacaatactttctaaatgaacagcatagtcaat 216 Query: 109 agccatatccacggtatccccactctctatcctgtctggagttgaatcatttccaaatgt 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 agccatatccacggtatccccactctctatcctgtctggagttgaatcatttccaaatgt 276 Query: 169 gataacgccatggttgacgctccagtcacgttctttatcgaacgcctccatctccttttc 228 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 277 gataacgccatggttgacgctccagtcacgttctttagcgaacgcctccatctccttttc 336 Query: 229 attctcgaagaatagtagagtcttagcgttgaacaatggtaaggagctatatgcttgttc 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 337 attctcgaagaatagtagagtcttagcgttgaacaatggtaaggagctatatgcttgttc 396 Query: 289 agaattcaaagcaatttcctctcttatagcctctttcaaagtctttgtgaaaacattgaa 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 397 agaattcaaagcaatttcctctcttatagcctctttcaaagtctttgtgaaaacattgaa 456 Query: 349 ctcttcaaccttagaacctgtttgtaacagatcccaagccttttgataagaaccttccat 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 457 ctcttcaaccttagaacctgtttgtaacagatcccaagccttttgataagaaccttccat 516 Query: 409 caaaagtctttccaactttactggataagagaggtacgaactctcttccaaattcgtaac 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 517 caaaagtctttccaactttactggataagagaggtacgaactctcttccaaattcgtaac 576 Query: 469 gtatctgctcaaaaactcaaattctgagtgaagtttagtgtaatcgttttgtgctagcaa 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 577 gtatctgctcaaaaactcaaattctgagtgaagtttagtgtaatcgttttgtgctagcaa 636 Query: 529 gattaataagtacaaacttatcaacttgaacttgctatctgaatcactcaattctttcac 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 gattaataagtacaaacttatcaacttgaacttgctatctgaatcactcaattctttcac 696 Query: 589 atcagaaaagtagaatgcgcttaactgtgagtaatagttcatgaaagtttcanaatcctc 648 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 697 atcagaaaagtagaatgcgcttaactgtgagtaatagttcatgaaagtttcaaaatcctc 756 Query: 649 acagtatatgctttgaagtgctcctatctcaagtattttcctttgctttattcaaatcct 708 ||||||||||||| ||||||||||||||||||||| || ||||||| |||||| ||||| Sbjct: 757 acagtatatgcttgaaagtgctcctatctcaagtatctt-ctttgctatattcagatcct 815 Query: 709 gtaaatagctttggattttccttaacgcttttgatatcaagtattaacaatttggcttta 768 ||| |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||| Sbjct: 816 gtagatagcttt-gattttccttagcgcttttgatatcaggtattaacaattttgcttta 874 Query: 769 ttcaattcattcttgttaggaagt 792 |||||||| ||||| |||||||| Sbjct: 875 atcaattcaatcttgataggaagt 898 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7240 Number of Sequences: 1807 Number of extensions: 7240 Number of successful extensions: 49 Number of sequences better than 1.0e-20: 1 length of query: 930 length of database: 10,358,551 effective HSP length: 16 effective length of query: 914 effective length of database: 10,329,639 effective search space: 9441290046 effective search space used: 9441290046 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)