BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZC12RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig928                                                         1334   0.0  

>3x_Contig928 
          Length = 1948

 Score = 1334 bits (673), Expect = 0.0
 Identities = 728/744 (97%), Gaps = 2/744 (0%)
 Strand = Plus / Plus

                                                                       
Query: 49  aagtgtatatttttatgatattacctatacaatactttctaaatgaacagcatagtcaat 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 aagtgtatatttttatgatattacctatacaatactttctaaatgaacagcatagtcaat 216

                                                                       
Query: 109 agccatatccacggtatccccactctctatcctgtctggagttgaatcatttccaaatgt 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 agccatatccacggtatccccactctctatcctgtctggagttgaatcatttccaaatgt 276

                                                                       
Query: 169 gataacgccatggttgacgctccagtcacgttctttatcgaacgcctccatctccttttc 228
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 277 gataacgccatggttgacgctccagtcacgttctttagcgaacgcctccatctccttttc 336

                                                                       
Query: 229 attctcgaagaatagtagagtcttagcgttgaacaatggtaaggagctatatgcttgttc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 attctcgaagaatagtagagtcttagcgttgaacaatggtaaggagctatatgcttgttc 396

                                                                       
Query: 289 agaattcaaagcaatttcctctcttatagcctctttcaaagtctttgtgaaaacattgaa 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agaattcaaagcaatttcctctcttatagcctctttcaaagtctttgtgaaaacattgaa 456

                                                                       
Query: 349 ctcttcaaccttagaacctgtttgtaacagatcccaagccttttgataagaaccttccat 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctcttcaaccttagaacctgtttgtaacagatcccaagccttttgataagaaccttccat 516

                                                                       
Query: 409 caaaagtctttccaactttactggataagagaggtacgaactctcttccaaattcgtaac 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caaaagtctttccaactttactggataagagaggtacgaactctcttccaaattcgtaac 576

                                                                       
Query: 469 gtatctgctcaaaaactcaaattctgagtgaagtttagtgtaatcgttttgtgctagcaa 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtatctgctcaaaaactcaaattctgagtgaagtttagtgtaatcgttttgtgctagcaa 636

                                                                       
Query: 529 gattaataagtacaaacttatcaacttgaacttgctatctgaatcactcaattctttcac 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gattaataagtacaaacttatcaacttgaacttgctatctgaatcactcaattctttcac 696

                                                                       
Query: 589 atcagaaaagtagaatgcgcttaactgtgagtaatagttcatgaaagtttcanaatcctc 648
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 697 atcagaaaagtagaatgcgcttaactgtgagtaatagttcatgaaagtttcaaaatcctc 756

                                                                       
Query: 649 acagtatatgctttgaagtgctcctatctcaagtattttcctttgctttattcaaatcct 708
           |||||||||||||  ||||||||||||||||||||| || ||||||| |||||| |||||
Sbjct: 757 acagtatatgcttgaaagtgctcctatctcaagtatctt-ctttgctatattcagatcct 815

                                                                       
Query: 709 gtaaatagctttggattttccttaacgcttttgatatcaagtattaacaatttggcttta 768
           ||| |||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct: 816 gtagatagcttt-gattttccttagcgcttttgatatcaggtattaacaattttgcttta 874

                                   
Query: 769 ttcaattcattcttgttaggaagt 792
            |||||||| ||||| ||||||||
Sbjct: 875 atcaattcaatcttgataggaagt 898


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7240
Number of Sequences: 1807
Number of extensions: 7240
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)