BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD01RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1657 1437 0.0
>3x_Contig1657
Length = 14558
Score = 1437 bits (725), Expect = 0.0
Identities = 784/799 (98%), Gaps = 4/799 (0%)
Strand = Plus / Plus
Query: 42 cttagtgaacgggataaaaactgatggagatgctattaggttacttgatgtggattttaa 101
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5538 cttagtgaacgggataaaaactgagggagatgctattaggttacttgatgtggattttaa 5597
Query: 102 catgagcgttgaggtaaatgaatgccagcctagttccacagttaccgttgatttataatc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5598 catgagcgttgaggtaaatgaatgccagcctagttccacagttaccgttgatttataatc 5657
Query: 162 atggagtctgtgaaacatacatacattatttttgtttagtatataaggaacgcattattt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 5658 atggagtctgtgaaacatacatacattatttttgtttagtatataaggaacgcatcactt 5717
Query: 222 ctggaccctctcttgttctgcaatataaaccttgcatatagactcgttataggcaaggca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5718 ctggaccctctcttgttctgcaatataaaccttgcatatagactcgttataggcaaggca 5777
Query: 282 agtaaacatatataggttgctcggaatcgtactcgtaaaaagactagttcgaaacaatgg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5778 agtaaacatatataggttgctcggaatcgtactcgtaaaaagactagttcgaaacaatgg 5837
Query: 342 ctacaggtatttccaagactttgaaatataacgcacaaacggataagttaatcacttttg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5838 ctacaggtatttccaagactttgaaatataacgcacaaacggataagttaatcacttttg 5897
Query: 402 cagctggctgcttctggggtactcaacacatctttttgaagcatttcggggacaagatca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5898 cagctggctgcttctggggtactcaacacatctttttgaagcatttcggggacaagatca 5957
Query: 462 ttgatggcaaagttggatattctaatggatccgaaagtctgaaagacaaaccagatacag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5958 ttgatggcaaagttggatattctaatggatccgaaagtctgaaagacaaaccagatacag 6017
Query: 522 tttcttacgaacgtgtcaagaagggtgataccggcttcgctgaagtttatcaaatctcat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6018 tttcttacgaacgtgtcaagaagggtgataccggcttcgctgaagtttatcaaatctcat 6077
Query: 582 acaatcctaagctggtatctttgaaggagcttgtagacttctttttccgtattcatgatc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6078 acaatcctaagctggtatctttgaaggagcttgtagacttctttttccgtattcatgatc 6137
Query: 642 ctactacggtaaatgctcanggccctgatcaaggtagtcaataccgtagtgctatctttg 701
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6138 ctactacggtaaatgctcagggccctgatcaaggtagtcaataccgtagtgctatctttg 6197
Query: 702 cgcactcagaagctgatctncacgagctaaaaaaa-tgaaagagcagtggcagccaaaat 760
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 6198 cgcactcagaagctgatctcaacgagctaaaaaaattgaaagagcagtggcagccaaaat 6257
Query: 761 gg-acaacaggattggtactgatatctctttgattgataac-tccatgatgctgaagaat 818
|| |||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 6258 ggaacaacaagattgttactgatatctctttgattgataacttctatgatgctgaagaat 6317
Query: 819 ttcttc-attgtacctaga 836
|| || ||||||||||||
Sbjct: 6318 atcatcaattgtacctaga 6336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7127
Number of Sequences: 1807
Number of extensions: 7127
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)