BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD02FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig707 593 e-169
3x_Contig1704 389 e-108
>3x_Contig707
Length = 1885
Score = 593 bits (299), Expect = e-169
Identities = 334/343 (97%), Gaps = 2/343 (0%)
Strand = Plus / Minus
Query: 531 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcataaagagctgccagat 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcataaagagctgccagat 1826
Query: 591 tctatcttcggatcggatataataaggactttgacaccaatcaaaacattcatggatatt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 tctatcttcggatcggatataataaggactttgacaccaatcaaaacattcatggatatt 1766
Query: 651 agatttactatagactctgatactccaacacagattacctggggtaaatctcttcagcca 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 agatttactatagactctgatactccaacacagattacctggggtaaatctcttcagcca 1706
Query: 711 ggttatcaaagcgtaatgttgtggtttgatttcctaacgaagcctccaatggatccatct 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 ggttatcaaagcgtaatgttgtggtttgatttcctaacgaagcctccaatggatccatct 1646
Query: 771 cccatagtaaggttctgggataaaatcatgcttttatttcatggtaaactcgagttccaa 830
|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1645 cccaaagtagggttctgggataaaatcaggcttttatttcatggtaaactcgagttccaa 1586
Query: 831 tgggcttattaatagttccatgcaccttatatttaaagggatc 873
| |||||| ||||||||| ||||| |||| |||| ||||||||
Sbjct: 1585 t-ggcttagtaatagttcaatgca-cttaaattttaagggatc 1545
>3x_Contig1704
Length = 14855
Score = 389 bits (196), Expect = e-108
Identities = 199/200 (99%)
Strand = Plus / Minus
Query: 77 caagctcgccggaactgaagaatatctcaatcaacagtataccagactttatgagaattt 136
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 caagcttgccggaactgaagaatatctcaatcaacagtataccagactttatgagaattt 152
Query: 137 ttcaacttcttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttcaacttcttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatc 92
Query: 197 ttatgcagtcaataacaccattttagactacgaattttccacgttttctgttgacaacga 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ttatgcagtcaataacaccattttagactacgaattttccacgttttctgttgacaacga 32
Query: 257 tgtaaattcactcaaaattt 276
||||||||||||||||||||
Sbjct: 31 tgtaaattcactcaaaattt 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6367
Number of Sequences: 1807
Number of extensions: 6367
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)