BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD02RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1350 0.0
>3x_Contig1589
Length = 10239
Score = 1350 bits (681), Expect = 0.0
Identities = 750/769 (97%), Gaps = 3/769 (0%)
Strand = Plus / Minus
Query: 43 caagcttaaagaaactcaaaggttccacataatagaattcttggaagaagaactgctcat 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 caagcttaaagaaactcaaaggttccacataatagaattcttggaagaagaactgctcat 951
Query: 103 ttgtttccgcctccgtgcagttctctacacagattctccttagcttgacatacttagcaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 ttgtttccgcctccgtgcagttctctacacagattctccttagcttgacatacttagcaa 891
Query: 163 tatcctcaatcatggagtcatttggaatctgcatctctaataccctaacaaagatctccg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tatcctcaatcatggagtcatttggaatctgcatctctaataccctaacaaagatctccg 831
Query: 223 ttccatattttccaagctccctgcagctgcccttgtctaagtgagatagaatcaataaga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ttccatattttccaagctccctgcagctgcccttgtctaagtgagatagaatcaataaga 771
Query: 283 catccaattttaaggaaagatagtgtttgtagtctatgatagcatcaaacaagtccctgt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 catccaattttaaggaaagatagtgtttgtagtctatgatagcatcaaacaagtccctgt 711
Query: 343 gatctttgtagaagttgaatttggcactttggtcaccgatgaggcccttgcgaagctcca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gatctttgtagaagttgaatttggcactttggtcaccgatgaggcccttgcgaagctcca 651
Query: 403 aaagcacctgcttcgtgactctctgacgttgctgagtaaccattgttgtcttattttgca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaagcacctgcttcgtgactctctgacgttgctgagtaaccattgttgtcttattttgca 591
Query: 463 ctctggccaccgcgcggttgtcttttgaagacacccttattcactcttt-acaggttcga 521
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 590 ctctggccaccgcgcggttgtcttttgaagacacccttattcactctttcacaggttcga 531
Query: 522 actatgtcaaatcccttaaccgtgaatgtagatatatgatggaatagcgttcttgggcaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 actatgtcaaatcccttaaccgtgaatgtagatatatgatggaatagcgttcttgggcaa 471
Query: 582 aactacaaattaaggcagataggatacaacttatggtgcgatctcactagtcgggggtgt 641
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aactacaaataaaggcagaaaggatacaacttatggtgcgatctcactagtcgggggtgt 411
Query: 642 taagatagacggatggtactaggtaagcgattgatatgtgtatttacgtattttgctacg 701
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 taggatagacggatggtactaggtaagcgattgatatgtgtatttacgtattttgctacg 351
Query: 702 actatgatgagagataggaaggttatttgcttacgggcacgtttattgcacgtgattcca 761
||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| | |
Sbjct: 350 actatgaggagagatagg-aggttatttgcttacggtcacgtttattgcacgtgatacga 292
Query: 762 ttaaccaacctgccttaattcgggaatggggtcccctacgtccagtttg 810
| ||| ||| ||| | ||| | ||||| |||| | ||||||||||||||
Sbjct: 291 taaacgaacatgcataaatactggaat-gggtacactacgtccagtttg 244
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5445
Number of Sequences: 1807
Number of extensions: 5445
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)