BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD03FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1076 0.0
>3x_Contig1718
Length = 19496
Score = 1076 bits (543), Expect = 0.0
Identities = 639/667 (95%), Gaps = 3/667 (0%)
Strand = Plus / Minus
Query: 88 tggattattacctggggtaagaccttccaagataaagaaataaagtagaaaacatagaac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9793 tggattattacctggggtaagaccttccaagataaagaaataaagtagaaaacatagaac 9734
Query: 148 gcatcgaggtctatcaatacagtgtattatgtggtatattatgaagtaataggtttctga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9733 gcatcgaggtctatcaatacagtgtattatgtggtatattatgaagtaataggtttctga 9674
Query: 208 tggaatgatttctgatttggttaatattatacatgcgaaatactgatctatttgatctaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9673 tggaatgatttctgatttggttaatattatacatgcgaaatactgatctatttgatctaa 9614
Query: 268 gattgttatatagaaaagaagttaattcaattgtttatagtggaagtttttcgaactgct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 gattgttatatagaaaagaagttaattcaattgtttatagtggaagtttttcgaactgct 9554
Query: 328 ctaaaaaagacgggaaataaaaccaaaagagagaactatgcgactttatttttgaacttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 ctaaaaaagacgggaaataaaaccaaaagagagaactatgcgactttatttttgaacttc 9494
Query: 388 gttgttcttaatttggttttagttttaatatgatattaatatgcatgaatttccgtgtat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 gttgttcttaatttggttttagttttaatatgatattaatatgcatgaatttccgtgtat 9434
Query: 448 agcttagaatctacgtccaccaccgaacccaccacgggaaaccggcacgagaaccaccga 507
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 9433 agcttagaatctacgtccaccaccgaacccaccacggg-aaccgccacgagaaccaccga 9375
Query: 508 attcacctttggatccacctctagaaccaccacgagagccaccgctgaattcaccacgac 567
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9374 atccacctctggatccacctctagaaccaccacgagagccaccgctgaatccaccacgac 9315
Query: 568 caccggtgaattcaccacgagagccaccgaattcaccacgagagccaccacgaccccctc 627
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 9314 caccgctgaatccaccacgagagccaccgaatccaccacgagagccaccacgaccacctc 9255
Query: 628 cgaatccacctttataaccgcct-ttgcaccaccagtggcaccacctatttccccacgac 686
||||||||||| || |||||||| ||||||||||| | ||||||| | | | |||||||
Sbjct: 9254 cgaatccacctctagaaccgcctcttgcaccaccacggccaccaccgaatccaccacgac 9195
Query: 687 cacccggtggcaccagatcccttttcttttgggtttggtgggccagcaaccttggggtta 746
|||| || ||||||||||| |||| ||||| |||||||||||||||||||| || |||
Sbjct: 9194 cacctgg-ggcaccagatctctttctctttggttttggtgggccagcaacctttggctta 9136
Query: 747 ggcaaga 753
|||||||
Sbjct: 9135 ggcaaga 9129
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6532
Number of Sequences: 1807
Number of extensions: 6532
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)