BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZD03RM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1256                                                        1251   0.0  

>3x_Contig1256 
          Length = 6519

 Score = 1251 bits (631), Expect = 0.0
 Identities = 713/735 (97%), Gaps = 4/735 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   accctgtagactttagtaatgggagcgagcttagaaggattaacgatgcaataaaaaatg 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3295 accctgtagactttagtaatgggagcgagcttagaaggattaacgatgcaataaaaaatg 3354

                                                                        
Query: 108  aggcaattggatcgaatatctgcgatttaaagatcttggtcaataaagtagatatgataa 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3355 aggcaattggatcgaatatctgcgatttaaagatcttggtcaataaagtagatatgataa 3414

                                                                        
Query: 168  ctccgacagagccaagggtatctgccaaaacatgaaggaagatacctctcatgttgtcat 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3415 ctccgacagagccaagggtatctgccaaaacatgaaggaagatacctctcatgttgtcat 3474

                                                                        
Query: 228  tagattcatgttcgccgtgagcatggccatggtcaaatgcacatagacctacaacgttta 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3475 tagattcatgttcgccgtgagcatggccatggtcaaatgcacatagacctacaacgttta 3534

                                                                        
Query: 288  caagtaaccctaggatagaaactactaacaactcggtagttcctagtattgtgactggat 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3535 caagtaaccctaggatagaaactactaacaactcggtagttcctagtattgtgactggat 3594

                                                                        
Query: 348  taaatattctttggaatgattcaatgaaaatttcaataacaattccaatcaacaagaccc 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 taaatattctttggaatgattcaatgaaaatttcaataacaattccaatcaacaagaccc 3654

                                                                        
Query: 408  catttgtgaaacctgcaatagtctctaagtagcccaacgcaaaaggatacttgtcactag 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3655 catttgtgaaacctgcaatagtctctaagtagcccaacgcaaaaggatacttgtcactag 3714

                                                                        
Query: 468  cggggtattttgaaagcacgccagccaataaaccgagatatagatgagtacaatcgagag 527
            |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||
Sbjct: 3715 cggggtattttgaaagcacgccagccaataaaccgagaaatagagaagtacaatcgagag 3774

                                                                        
Query: 528  ccatgtgtagcgagtcagataattatcccaatgacctggatctataggaatatagaagct 587
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 3775 ccatgtgtagcgagtcagataataatcccaatgacctggatctaaaggaatatagaagct 3834

                                                                        
Query: 588  gaacaaacttgaatgctgaa-taagtaataggaaagataaaatggatttcgtctctttgt 646
            |||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||
Sbjct: 3835 gaacaaacatgaatgctgaattaagtaatagaaaagaaaaaatggatttcgtctctttgt 3894

                                                                        
Query: 647  ttgtgcctagact-ataagaagtttactagtagttagaaaatc-ttcttattctcaaaaa 704
            ||||| ||||||| |||||||||||||||||||||||||| || |||| |||||||| ||
Sbjct: 3895 ttgtggctagactcataagaagtttactagtagttagaaattctttctcattctcaagaa 3954

                                                                        
Query: 705  gctctttatagtcatgagtttgccagtggggtggaaacggagggactatgttcttgttca 764
            |||||||| |||||||||| ||| ||| |||||||||||||| |||||||||| ||||||
Sbjct: 3955 gctctttagagtcatgagtatgcgagt-gggtggaaacggagtgactatgttcatgttca 4013

                           
Query: 765  tgctcgtttatttgg 779
            |||||||||| ||||
Sbjct: 4014 tgctcgtttagttgg 4028


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6752
Number of Sequences: 1807
Number of extensions: 6752
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)