BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD04FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1700 1378 0.0
>3x_Contig1700
Length = 16332
Score = 1378 bits (695), Expect = 0.0
Identities = 788/806 (97%), Gaps = 11/806 (1%)
Strand = Plus / Plus
Query: 88 cttaacatctgaacttatcggagtgacactatccgtgacataggttccattatttgatat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14045 cttaacatctgaacttatcggagtgacactatccgtgacataggttccattatttgatat 14104
Query: 148 tgtagctaggtctccagttgctctgatattctctgtgatgatagaactgtttttattgaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14105 tgtagctaggtctccagttgctctgatattctctgtgatgatagaactgtttttattgaa 14164
Query: 208 ggttatgttgatgatatattcatagttggtaatgcttgcggacgtttgaatgacaaatcc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14165 ggttatgttgatgatatattcatagttggtaatgcttgcggacgtttgaatgacaaatcc 14224
Query: 268 ccctgttctggtctgcaacggtaaaaccggttttgcagttctggtgcaagaatggcaagc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14225 ccctgttctggtctgcaacggtaaaaccggttttgcagttctggtgcaagaatggcaagc 14284
Query: 328 cacatttacctaagtcgaaggcttgcttcctgtggtacggtacggtcatctctacatctt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14285 cacatttacctaagtcgaaggcttgcttcctgtggtacggtacggtcatctctacatctt 14344
Query: 388 tttgtcattttaagttccaatagtttttcgtttacccttattagtgacttcagcggctaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14345 tttgtcattttaagttccaatagtttttcgtttacccttattagtgacttcagcggctaa 14404
Query: 448 ttcattggtatataaatctcttcatcagaatctaatgattagagtatcgttttttcaacc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14405 ttcattggtatataaatctcttcatcagaatctaatgattagagtatcgttttttcaacc 14464
Query: 508 tactttatcgttgttctatagcaaggcactaggtgggttaaaggcatactgatcatataa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14465 tactttatcgttgttctatagcaaggcactaggtgggttaaaggcatactgatcatataa 14524
Query: 568 tgagtgttgcagcggggactttggtattcatggctgatggcagtctaaagcccatagaag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14525 tgagtgttgcagcggggactttggtattcatggctgatggcagtctaaagcccatagaag 14584
Query: 628 atgtcacgatagaggaagaagtattgtcctcagatgggtctgccaatttcgtgcagagca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14585 atgtcacgatagaggaagaagtattgtcctcagatgggtctgccaatttcgtgcagagca 14644
Query: 688 tcattaactgccatgaaag-atgtttgaaatcactcagcttagt-cacatcgtgcccata 745
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 14645 tcattaactgccatgaaagaatgtttgaaatcactcagcttagtccacatcgtgcccata 14704
Query: 746 a-aat-aagatgtgaattttgc-tcctttgatattgata--gttgaagatgttcggtttc 800
| ||| |||||||||||||||| |||||||||| ||||| |||| |||||||||| |||
Sbjct: 14705 agaataaagatgtgaattttgcttcctttgata-tgataaggttg-agatgttcgggttc 14762
Query: 801 tcaagctttgatgttatcaaacccgattttgaaggaatgtttcaggaattaacgtaatcc 860
||||||||||||||||||||||| || |||||||||||||||||| || |||||||||
Sbjct: 14763 tcaagctttgatgttatcaaaccgtatattgaaggaatgtttcagg-atagacgtaatcc 14821
Query: 861 agaa-aaaggcttttggaacctgggg 885
|||| ||||||| |||||||||||||
Sbjct: 14822 agaagaaaggctgttggaacctgggg 14847
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5890
Number of Sequences: 1807
Number of extensions: 5890
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)