BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD04RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1650 1187 0.0
>3x_Contig1650
Length = 11257
Score = 1187 bits (599), Expect = 0.0
Identities = 654/670 (97%), Gaps = 2/670 (0%)
Strand = Plus / Plus
Query: 49 taacgtagtcattcaagtcaagaattaaatttctcttttccatttttaatacgtattccg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7100 taacgtagtcattcaagtcaagaattaaatttctcttttccatttttaatacgtattccg 7159
Query: 109 ttggatcgaggttcttcaacttacagtaattgactaatacttcgttaatcttggaagtca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7160 ttggatcgaggttcttcaacttacagtaattgactaatacttcgttaatcttggaagtca 7219
Query: 169 caggtattctgatgtttgtgaaattgtactgaggattcaaattaggatacaagaacactt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7220 caggtattctgatgtttgtgaaattgtactgaggattcaaattaggatacaagaacactt 7279
Query: 229 ttatattcacatagttagaaccagaatcagacatttgtgtattcttagagggaataatcg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7280 ttatattcacatagttagaaccagaatcagacatttgtgtattcttagagggaataatcg 7339
Query: 289 atttgtagtaacttaattgattgagatgagacagcccgtcattgctatcttcttgatcga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7340 atttgtagtaacttaattgattgagatgagacagcccgtcattgctatcttcttgatcga 7399
Query: 349 agtcatcggtcatgacacttggtaagggtgtctcttcttcattccgttcaaactgttcat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7400 agtcatcggtcatgacacttggtaagggtgtctcttcttcattccgttcaaactgttcat 7459
Query: 409 cgttcaatactttgcatatgacaacctcattatcaaatattgtgttgatctgctgagttc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7460 cgttcaatactttgcatatgacaacctcattatcaaatattgtgttgatctgctgagttc 7519
Query: 469 tctccaagactccgaaattatcttcgtaaggttcaccatcttcatcaacaatttttgang 528
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 7520 tctccaagactccgaaattatcttcgtaaggttcaccatcttcatcaacaa-ttttgagg 7578
Query: 529 gtgaaatgattggggttattaatttcatttgtcggaagttcccctgccgtatcaaggggt 588
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 7579 gtgaaatgattggggttattaatttcatctgtcggaagttcccctgccgtatcagggggt 7638
Query: 589 tttgatttcgtcgagttacagtataaactatatcccattacttcaaaaacgggtgctgtc 648
|| ||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 7639 ttgaattcggtcgagtaacagtataaactatatcccaatacttcaaaaacggttgctgtc 7698
Query: 649 ttcttgacactaatagtaaatggctttcggttatttgttttggaatccttgaatgtaaac 708
|||||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||
Sbjct: 7699 ttcttgacactaatagtaaatggcttccgtttatatgttttggaatcc-tgaatgtaaac 7757
Query: 709 atcccatttt 718
|||| |||||
Sbjct: 7758 atccaatttt 7767
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9694
Number of Sequences: 1807
Number of extensions: 9694
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)