BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD05FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1582 0.0
>3x_Contig675
Length = 2979
Score = 1582 bits (798), Expect = 0.0
Identities = 831/840 (98%), Gaps = 2/840 (0%)
Strand = Plus / Plus
Query: 88 gagatactgattagcatcagcaaattataagaatacacgcatcaaacaagggaacttgca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 gagatactgattagcatcagcaaattataagaatacacgcatcaaacaagggaacttgca 1736
Query: 148 ctgatctctgagttgaaaataagatgacgatggaggaaggtgggttcatcagaaggacaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 ctgatctctgagttgaaaataagatgacgatggaggaaggtgggttcatcagaaggacaa 1796
Query: 208 ggcagagcgggaaccggactcgaactgccaagaagaatgtcgtatacattgaatcaagtt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 ggcagagcgggaaccggactcgaactgccaagaagaatgtcgtatacattgaatcaagtt 1856
Query: 268 caggtgagtccgaggatgagccattagtaaagaaagaaattaagagcaataagggtaacg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 caggtgagtccgaggatgagccattagtaaagaaagaaattaagagcaataagggtaacg 1916
Query: 328 caaaagccaatgacaagggcaagtgcaaaaccaagggcacaactaaggcaaaccgaaatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 caaaagccaatgacaagggcaagtgcaaaaccaagggcacaactaaggcaaaccgaaatt 1976
Query: 388 tggattcggatttagagtatgatgattctttggttctcttatcggatcagacggacagat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 tggattcggatttagagtatgatgattctttggttctcttatcggatcagacggacagat 2036
Query: 448 ctggtgatgaatcaagtgatgagctcaaacgtgaacaggtagtcgaactgatatcctctt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 ctggtgatgaatcaagtgatgagctcaaacgtgaacaggtagtcgaactgatatcctctt 2096
Query: 508 ctgatgatgatgaacctctgcaaaatggaccgcaaaagaagaagagaaaggctaatggta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2097 ctgatgatgatgaacctctgcaaaatggaccgcaaaagaagaagagaaaggctaatggta 2156
Query: 568 gggctggtggtgccactgctactaagaagaagccgacaaaacccaagatctctcctttcg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2157 gggctggtggtgccactgctactaagaagaagccgacaaaacccaagatctctcctttcg 2216
Query: 628 aaagaaacacagcaaagttgtatgctcatcattcagaacttatcgatgtgttcaaaaaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 aaagaaacacagcaaagttgtatgctcatcattcagaacttatcgatgtgttcaaaaaat 2276
Query: 688 tacaggaatcgccgatacggcaggtggaaagagctcctcagcctgatggtatggccatta 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 tacaggaatcgccgatacggcaggtggaaagagctcctcagcctgatggtatggccatta 2336
Query: 748 gattattaccttttcagttggnaagtttgcactgtttgcaacaacaagaagattcggatt 807
||||||||||||||||||||| | |||||||||| ||||||||||||||||| |||||||
Sbjct: 2337 gattattaccttttcagttggaaggtttgcactggttgcaacaacaagaagaatcggatt 2396
Query: 808 ataatggtggtgtgcttgctgatgagatggttatgggtaaaaccatacanacgatagctt 867
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 2397 ataatggtggtgtgcttgctgatgagatgggtatgggtaaaaccatacaaacgatagctt 2456
Query: 868 tgctgatgagcgatattacaagg-aaccatctcttgtcgtggca-caacagtggcgttaa 925
|||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 2457 tgctgatgagcgatatcacaaggaaaccatctcttgtcgtggcaccaacagtggcgttaa 2516
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6976
Number of Sequences: 1807
Number of extensions: 6976
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)