BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD05RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig808 1540 0.0
>3x_Contig808
Length = 2957
Score = 1540 bits (777), Expect = 0.0
Identities = 818/828 (98%), Gaps = 3/828 (0%)
Strand = Plus / Minus
Query: 48 gttatgtgacattgacgatgctgttatcagagtttccaaggagtacttaccagagatggc 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 gttatgtgacattgacgaagctgttatcagagtttccaaggagtacttaccagagatggc 1187
Query: 108 gaagtcttattcccatcctaaggtcaagactcatatcggtgatggattccaattcttgag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 gaagtcttattcccatcctaaggtcaagactcatatcggtgatggattccaattcttgag 1127
Query: 168 agactaccaaaacacttttgacgttatcatcactgactcatctgacccggaaggtccagc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 agactaccaaaacacttttgacgttatcatcactgactcatctgacccggaaggtccagc 1067
Query: 228 cgcctctttgttccaacaatcttacttcgaattgttgaacggtgccttgactgagaaagg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 cgcctctttgttccaacaatcttacttcgaattgttgaacggtgccttgactgagaaagg 1007
Query: 288 tgtcatttccactcaagctgaaagtatgtggatccacttgccaatcatcaaggaattgaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 tgtcatttccactcaagctgaaagtatgtggatccacttgccaatcatcaaggaattgaa 947
Query: 348 gaaggcttgtaaggaggtcttcccaactgttggttatgcctacaccaccattccaactta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 gaaggcttgtaaggaggtcttcccaactgttggttatgcctacaccaccattccaactta 887
Query: 408 tccaaccggtcaaattggttttatggtgtgctctaaggatgccaatgtggatgtcactaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tccaaccggtcaaattggttttatggtgtgctctaaggatgccaatgtggatgtcactaa 827
Query: 468 accgttgagatcaatctcagaagaagaagaagaagccaagtaccgttactacaacaagaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 accgttgagatcaatctcagaagaagaagaagaagccaagtaccgttactacaacaagaa 767
Query: 528 agtgcacgaagcctctttcgtactacctacttgggtcgctaaagaattggacctgtgaca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agtgcacgaagcctctttcgtactacctacttgggtcgctaaagaattggacctgtgaca 707
Query: 588 acttaacgaattgataatccctcttttttctttatgcggtcttgtagatcgctatttcta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 acttaacgaattgataatccctcttttttctttatgcggtcttgtagatcgctatttcta 647
Query: 648 ttttattcctgacttatcaactattaacgttatcactcatagatttangctagactaatt 707
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 646 ttttattcctgacttatcaactattaacgttatcactcatagatttaggctagactaatt 587
Query: 708 aattcttcagtctactattaggatcaatgttcgtttgacacaacatattaataagtacta 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aattcttcagtctactattaggatcaatgttcgtttgacacaacatattaataagtacta 527
Query: 768 gtgtagccatagatacccgccttattatctatataaatctcaatcc-ttttctttctttt 826
||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 526 gtgtagccatagata-ccgccttattatctatataaatctcaatcctttttcttcctttt 468
Query: 827 cggaacattttggattcttcttctctttgcctttagacctatcgaatg 874
||| ||||||| |||||||||||||||||| || |||| |||||||||
Sbjct: 467 cgg-acatttttgattcttcttctctttgcattaagacatatcgaatg 421
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8684
Number of Sequences: 1807
Number of extensions: 8684
Number of successful extensions: 294
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)