BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD06FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig943 1063 0.0
3x_Contig251 357 3e-98
>3x_Contig943
Length = 2708
Score = 1063 bits (536), Expect = 0.0
Identities = 574/584 (98%), Gaps = 2/584 (0%)
Strand = Plus / Minus
Query: 251 ttacagaaaaggtttatggacgaacgaaagtattttgtgacataaaactacgctatttca 310
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2704 ttacagaaaaggtttatggacgaacgtaagtattttgtgacataaaactacgctatttca 2645
Query: 311 aatcaactagagctttttcgaatccgtttagagtcatagtttccaatcgattccagagtt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2644 aatcaactagagctttttcgaatccgtttagagtcatagtttccaatcgattccagagtt 2585
Query: 371 cgaatttttcaaaaattatcaaagtcgtcaaacgtgatatgtcttgctgtcacatgatat 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2584 cgaatttttcaaaaattatcaaagtcgtcaaacgtgatatgtcttgctgtcacatgatat 2525
Query: 431 caaaattatcttaaagtcaaatccgtcactctgtcctgccgcagcggatgacgatggatt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2524 caaaattatcttaaagtcaaatccgtcactctgtcctgccgcagcggatgacgatggatt 2465
Query: 491 ctgtgaaataaagaatctacaaatgtgccaacatctcacctctcgccaaatcgacgctgc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2464 ctgtgaaataaagaatctacaaatgtgccaacatctcacctctcgccaaatcgacgctgc 2405
Query: 551 gatgagtgaagcttgaacgtggttgaaatctttaataaatgatgataatttatgatattt 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2404 gatgagtgaagcttgaacgtggttgaaatctttaataaatgatgataatttatgatattt 2345
Query: 611 agtaacctttgtatatgtatgtataaaccatggtgtacaaggacttttgtacacgaattg 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344 agtaacctttgtatatgtatgtataaaccatggtgtacaaggacttttgtacacgaattg 2285
Query: 671 tagagagtactagatcgcatgagtgatttaattaataattaattagatcccatcaattga 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2284 tagagagtactagatcgcatgagtgatttaattaataattaattagatcccatcaattga 2225
Query: 731 agcccttatcattctaccgaaatgaat-aaaaaaaataagattggcaatgtatgatgaat 789
|||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2224 agcctttatcagtctaccgaaatgaataaaaaaaaataagattggcaatgtatgatgaat 2165
Query: 790 gatgaaagacgtt-atcgttaattgtgaagtttggcatgagaga 832
|| ||||||||| |||||||||||||| || ||| ||||||||
Sbjct: 2164 gagaaaagacgttaatcgttaattgtgaggtatgggatgagaga 2121
>3x_Contig251
Length = 1124
Score = 357 bits (180), Expect = 3e-98
Identities = 183/184 (99%)
Strand = Plus / Plus
Query: 87 caaagaagtatggaaagcatcaatttcattccagaaggctaagactttctcttcctcttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 caaagaagtatggaaagcatcaatttcattccagaaggctaagactttctcttcctcttc 1000
Query: 147 cgggaaagagaaataagtgttaccttcggcagccattttctctcttaattataagataga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 cgggaaagagaaataagtgttaccttcggcagccattttctctcttaattataagataga 1060
Query: 207 aagtgatgtgtcgtttgcttaacttgatcacagcttgcaaaagcttacagaaaaggttta 266
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1061 aagtgatgtgtcgtttgcttaacttgatcacagcttgcaaaaccttacagaaaaggttta 1120
Query: 267 tgga 270
||||
Sbjct: 1121 tgga 1124
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7633
Number of Sequences: 1807
Number of extensions: 7633
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)