BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD06RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig526 1092 0.0
>3x_Contig526
Length = 2622
Score = 1092 bits (551), Expect = 0.0
Identities = 705/750 (94%), Gaps = 5/750 (0%)
Strand = Plus / Plus
Query: 48 taggcattgataattcggtcgttgatctatgttttgctggtactgcctctagaatcaaag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taggcattgataattcggtcgttgatctatgttttgctggtactgcctctagaatcaaag 552
Query: 108 gtgttacatttgaatacttggcacaagattcgttctctatgcatgaacgcgggttcccat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtgttacatttgaatacttggcacaagattcgttctctatgcatgaacgcgggttcccat 612
Query: 168 ctagattaacgatacaaaaatcggtaaatttgcctgagtccggtgaatatcattggagag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctagattaacgatacaaaaatcggtaaatttgcctgagtccggtgaatatcattggagag 672
Query: 228 atggtggctacaagcatatcaatgatcctactgccattgctgccctacaggactccgtga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atggtggctacaagcatatcaatgatcctactgccattgctgccctacaggactccgtga 732
Query: 288 gaaacaaaaacgaagatgcatgggaaatgtacgttaagaaagaaatggaggctatcaaag 347
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 733 gaaacaaaaacgaagatgcatgggaaatgtacgttaagaaagacatggaggctatcaaag 792
Query: 348 actgtactctaagaggtctcttggaattggattattctgattcggaatcaatcccattgg 407
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 actgtactcttagaggtctcttggaattggattattctgattcggaatcaatcccattgg 852
Query: 408 aacaagttgaaccttggacggagatcgcaagaagatttgctactggtgctatgtcgtatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aacaagttgaaccttggacggagatcgcaagaagatttgctactggtgctatgtcgtatg 912
Query: 468 ggtcaatttccatggaagctcactccacattagcagttgcaatgaaccgttttagtgcca 527
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 913 ggtcaatttccatggaagctcactccacattagcagttgcaatgaaccgtttaggtgcca 972
Query: 528 agagtaactgtggtgaaagtggtgaagatccagagagatctattgttaactccaac-gtg 586
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 973 agagtaactgtggtgaaggtggtgaagatccagagagatctattgtaaactccaacggtg 1032
Query: 587 acaccatgagatctgnc-ttaagcaagttcgatttgcaattttcgggggaacattattct 645
||||||||||||||| | | |||||||| || ||| | ||||| | ||||| |||||
Sbjct: 1033 acaccatgagatctgccatcaagcaagtcgcatctgcgaggttcggtgtaacatcattct 1092
Query: 646 atttatcagatgctggcgaaattcaaattaaaat-gcctaaagtgcctagccaagtggaa 704
||||||||||||||| ||||||||||||||| || || || |||| ||||| || |||
Sbjct: 1093 atttatcagatgctgacgaaattcaaattaagatagctcaaggtgctaagccaggt-gaa 1151
Query: 705 gggggggaattccctgctcccaaggtttcc-aagaaattgccaaaacttaacattttagc 763
|| || ||||| ||||||| |||||||||| ||||||||||||||||| ||||| ||
Sbjct: 1152 ggtggtgaattacctgctcacaaggtttccaaagaaattgccaaaactagacattctacg 1211
Query: 764 ctttatgggggtttgaattttccaactcct 793
| ||||| |||||||| || |||| |||||
Sbjct: 1212 ccttatgtgggtttgatttctccacctcct 1241
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7404
Number of Sequences: 1807
Number of extensions: 7404
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)