BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD07FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1275 0.0
>3x_Contig1761
Length = 23186
Score = 1275 bits (643), Expect = 0.0
Identities = 688/701 (98%), Gaps = 2/701 (0%)
Strand = Plus / Plus
Query: 87 taacttctttgctgttactaattgttcaaacgcatttcaattcttagcggaagctactag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 taacttctttgctgttactaattgttcaaacgcatttcaattcttagcggaagctactag 6233
Query: 147 tatcacacaattagcaaagcatatgtttcgcttcattgtggctaggccattcactgtacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 tatcacacaattagcaaagcatatgtttcgcttcattgtggctaggccattcactgtacc 6293
Query: 207 aaaggtaaggccggtaagacgactttatagcacggtcaggacatcgactgttgactggaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6294 aaaggtaaggccggtaagacgactttatagcacggtcaggacatcgactgttgactggaa 6353
Query: 267 acctatcaaaacaaagaagacacctactgaaggatttcaaaagaaggaatcacgatgggg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6354 acctatcaaaacaaagaagacacctactgaaggatttcaaaagaaggaatcacgatgggg 6413
Query: 327 taagcgtatttttctaggactgatgattgccatgcccgtgatctcgttctacttatgaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6414 taagcgtatttttctaggactgatgattgccatgcccgtgatctcgttctacttaggaac 6473
Query: 387 ctggcaattaagaagattgaaatggaaaaccaatctaattgcttcctgcgaagacaaatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6474 ctggcaattaagaagattgaaatggaaaaccaatctaattgcttcctgcgaagacaaatt 6533
Query: 447 aacctacgatcctattccgttacctaaaacgtttacaccggatatgtgcgaagactggga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6534 aacctacgatcctattccgttacctaaaacgtttacaccggatatgtgcgaagactggga 6593
Query: 507 ataccgcaagtgtactatgaccggtagattcttgcatgatgaagagatttttgtcggccc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6594 ataccgcaagtgtactatgaccggtagattcttgcatgatgaagagatttttgtcggccc 6653
Query: 567 ccgtgttagatgatggatcaaggggtacgttttatatacgcctttcatcagaaaggatac 626
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654 ccgtgttagaggagggatcaaggggtacgttttatatacgcctttcatcagaaaggatac 6713
Query: 627 nggagaaagaa-tttgattgaacgtgnttggatctcgga-gagaaaatcgttccatcatc 684
|||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 6714 gggagaaagaattttgattgaacgtggttggatctcggaggagaaaatcgttccatcatc 6773
Query: 685 tcgtaacttgcaacatttggctttacctcaaagcgataacgtgacaattacattgttaat 744
||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 6774 tcgtaacttgcaacatttgtctttacctcaaggcgataacgtgacaattacagtgttagt 6833
Query: 745 gcgtgcagcttaagatttgacttcaatgcaatggaagaagg 785
|||||||||| |||||||||| |||||||||||||||||||
Sbjct: 6834 gcgtgcagctaaagatttgacatcaatgcaatggaagaagg 6874
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6191
Number of Sequences: 1807
Number of extensions: 6191
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)