BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD07RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1213 0.0
>3x_Contig1771
Length = 25932
Score = 1213 bits (612), Expect = 0.0
Identities = 728/761 (95%), Gaps = 5/761 (0%)
Strand = Plus / Minus
Query: 48 actactcacgtagggtagagattgctcaaatattccgtaacaaattacagaagtgtttgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8697 actactcacgtagggtagagattgctcaaatattccgtaacaaattacagaagtgtttgg 8638
Query: 108 ttcaacgagataccccaccaacagatgcagatcttgccgagtctgataaactcatgagga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8637 ttcaacgagataccccaccaacagatgcagatcttgccgagtctgataaactcatgagga 8578
Query: 168 aaatcctatcacatactaaatcaacaccggaattctttgatttagaagcccttagggtat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8577 aaatcctatcacatactaaatcaacaccggaattctttgatttagaagcccttagggtat 8518
Query: 228 ccaaattgcataaactattaaaagtcatttctagtatgcctgaattatcacagtttcacg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8517 ccaaattgcataaactattaaaagtcatttctagtatgcctgaattatcacagtttcacg 8458
Query: 288 aatcttgtaacactatattggaagtgtgggcacctcatgttcaaaagatcaaaaaggaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8457 aatcttgtaacactatattggaagtgtgggcacctcatgttcaaaagatcaaaaaggaaa 8398
Query: 348 aactgaaactgaagggttcgctatccccatagagtggatcacaactgtcacttttaatat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8397 aactgaaactgaagggttcgctatccccatagagtggatcacaactgtcacttttaatat 8338
Query: 408 cttcgattcataataagagcacaaaagaaccgttcaaaaggaaagcacaaacaatgcatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8337 cttcgattcataataagagcacaaaagaaccgttcaaaaggaaagcacaaacaatgcatt 8278
Query: 468 actgctntataacaaattcaattcaattctgacattattctcatgtaaaatctatcacat 527
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8277 actgctttataacaaattcaattcaattctgacattattctcatgtaaaatctatcacat 8218
Query: 528 ttacctacantatctcatccctaccacctcttcagttaccttaccgtacctatttcttct 587
| ||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct: 8217 taacctacataatctcatccctaccacctctccagttacctcaccgtacctattccttct 8158
Query: 588 ttttctggaccccttcatcat-atgtatcattatttacggttatcgctctgttccccatc 646
||| ||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 8157 tttcttggacccttcaatcataatgtatcattatttacgtttatcgctctgttccccatc 8098
Query: 647 aattgtaatatttaacaaaatgnccaaaa-ctttaaaatgactttaaggtagc-aaattg 704
|||||| || |||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct: 8097 aattgttattattaacaaaattgccaaaacctttaaaatgactttaaggtagcaaaattg 8038
Query: 705 ggcactttaattacaaacat-agacatcttttccataagcttgcccattagggacccgat 763
|||| || ||||||||||| |||||||||| ||||||||| || ||||||||| |||||
Sbjct: 8037 tgcac-ttcattacaaacatcagacatctttcccataagctagcacattagggaaccgat 7979
Query: 764 tttttaattatatttcccgtaaatttttatggttaatcaaa 804
|||||||||||||||| |||||||||||| ||| ||||||
Sbjct: 7978 attttaattatatttcctgtaaatttttattgtttatcaaa 7938
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,768
Number of Sequences: 1807
Number of extensions: 14768
Number of successful extensions: 224
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)