BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD08FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig33 878 0.0
3x_Contig1806 799 0.0
3x_Contig63 712 0.0
3x_Contig1015 180 3e-45
>3x_Contig33
Length = 834
Score = 878 bits (443), Expect = 0.0
Identities = 548/571 (95%), Gaps = 9/571 (1%)
Strand = Plus / Minus
Query: 301 tcggttacgggttatcttataccgaatttgccttatctaatctgcaagttcaaataaatg 360
|||||||||||| || ||| || |||||||| |||| |||||||||||||||||||||||
Sbjct: 714 tcggttacgggtcattttacacagaatttgctttatttaatctgcaagttcaaataaatg 655
Query: 361 acgaagttatctctgtttctgttgatgttaagaacacaggtgagaaatatgcgggatctg 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aagaagttatctctgtttctgttgatgttaagaacacaggtgagaaatatgcgggatctg 595
Query: 421 aagtcgtacaagttt-atattgctgctactgaatcatctgtttctagggcagtgaaggag 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aagtcgtacaagttttatattgctgctactgaatcatctgtttctagggcagtgaaggag 535
Query: 480 ttgaagggattcaagaaagttttacttcaacccgggcaaaccgaaacagcaaagattgat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttgaagggattcaagaaagttttacttcaacccgggcaaaccgaaacagcaaagattgat 475
Query: 540 ttagtcttgaaggactctgtctccttcttcgatgaagaagtcggtaagtggtgttcagaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttagtcttgaaggactctgtctccttcttcgatgaagaagtcggtaagtggtgttcagaa 415
Query: 600 gctggtcagtaca-aagtcttggtaggtacttcttccgatgacattgtcctgagtgaatc 658
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gctggtcagtacacaagtcttggtaggtacttcttccgatgacattgtcctgagtgaatc 355
Query: 659 tttcgacgtggagaaaacctcttactggtcaggttttgtagttgagcaatacggttaatt 718
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 354 tttcgacgtggagaaaacctcttactggtcagg-tttgtagttgagcaatacggttaatt 296
Query: 719 acaaacatgtttcactgtccacatttattatgtaactagaatgtctttttatgtcttatg 778
|||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct: 295 acaaacatgtttcactgtccacatttataatgtaactag-atgtc-ttttatgtcttatg 238
Query: 779 atttttagtaaggaaatagaaataactttcttttttagttctggatcccgattaaaactt 838
||||||||||| ||||||| |||||||| || |||||||||| |||| |||| ||||| |
Sbjct: 237 atttttagtaaagaaatag-aataacttcctcttttagttct-gatcgcgataaaaac-t 181
Query: 839 tggacaattggcttataatatttacaatgta 869
||||| |||||| ||||||||||||||||||
Sbjct: 180 tggacgattggc-tataatatttacaatgta 151
>3x_Contig1806
Length = 53694
Score = 799 bits (403), Expect = 0.0
Identities = 642/715 (89%), Gaps = 5/715 (0%)
Strand = Plus / Plus
Query: 86 gtacggaggcaatgagctgggtaatgctattgctgacgtcttgtatggtgatgttgttcc 145
||||||||| |||||| |||| |||||||||||||| |||||||||||||| ||| ||||
Sbjct: 52094 gtacggaggtaatgagttgggcaatgctattgctgatgtcttgtatggtgacgttattcc 52153
Query: 146 aaatgggaaattatctctctcatggccattaaagcttgaagacaatccagcttatttgaa 205
|| ||| ||||||||||||||||||||| |||| |||||||| || ||| ||||||||||
Sbjct: 52154 aagtggtaaattatctctctcatggccaataaaccttgaagataacccaacttatttgaa 52213
Query: 206 cttcaagactgaatttggcagagttgtctacggtgaggatattttcattggatacagatt 265
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 52214 cttcaagactgaatttggcagagttctctacggtgaggatattttcattggatacagatt 52273
Query: 266 ctatgaaaagctgcaaaaaagagttgcattccccttcggttacgggttatcttataccga 325
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 52274 ctatgagaagttgcaaagaagagttgcattccccttcggttacgggttatcttatactga 52333
Query: 326 atttgccttatctaatctgcaagttcaaataaatgacgaagttatctctgtttctgttga 385
|||||| ||||||||||| ||||| |||| |||| || |||||||||||||||||| |
Sbjct: 52334 atttgctttatctaatctacaagtacaaacggatgaggaggttatctctgtttctgttaa 52393
Query: 386 tgttaagaacacaggtgagaaatatgcgggatctgaagtcgtacaagtttatattgctgc 445
||| |||||| |||||||| |||||||||||| |||||||||||| |||| ||||||||
Sbjct: 52394 tgtaaagaacgcaggtgaggcatatgcgggatccgaagtcgtacaaatttacattgctgc 52453
Query: 446 tactgaatcatctgtttctagggcagtgaaggagttgaagggattcaagaaagttttact 505
|||||||||||| ||||||||||||| || ||||||||||||||||||||| |||| ||
Sbjct: 52454 gactgaatcatctttttctagggcagtcaaagagttgaagggattcaagaaaattttgct 52513
Query: 506 tcaacccgggcaaaccgaaacag-caaagattgatttagtcttgaaggactctgtctcct 564
|||||| ||||||| |||||||| ||||| |||||||| |||||||||| ||| | ||||
Sbjct: 52514 tcaacctgggcaaaacgaaacagtcaaag-ttgatttaatcttgaaggattctatttcct 52572
Query: 565 tcttcgatgaagaagtcggtaagtggtgttcagaagctggtcagtacaaagtcttggtag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52573 tcttcgatgaagaagtcggtaagtggtgttcagaagctggtcagtacaaagtcttggtag 52632
Query: 625 gtacttcttccgatgacattgtcctgagtgaatctttcgacgtggagaaaacctcttact 684
| || ||||| ||||||||||| ||||||||||||||||||||| |||||||||| || |
Sbjct: 52633 gcacatcttcagatgacattgtgctgagtgaatctttcgacgtgaagaaaacctcgtatt 52692
Query: 685 ggtcaggttttgtagttgagcaatacggttaattacaaacatgtttcactgtccacattt 744
|| |||| |||||||||| ||||||| || | | ||||||||| |||||||||||||
Sbjct: 52693 ggacagg-tttgtagttggccaatacgcttcacttgcaacatgttttactgtccacattt 52751
Query: 745 attatgtaactagaatgtctttttatgtcttatgatttttagtaaggaaatagaa 799
|| | ||| |||| ||||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 52752 ataaagtatctag-atgtc-ttttatgtcgtatgatttttagtaaagaaatagaa 52804
>3x_Contig63
Length = 856
Score = 712 bits (359), Expect = 0.0
Identities = 630/715 (88%), Gaps = 4/715 (0%)
Strand = Plus / Minus
Query: 86 gtacggaggcaatgagctgggtaatgctattgctgacgtcttgtatggtgatgttgttcc 145
||||||||| ||||| ||||| ||||||||||| || |||||||| || || ||||||||
Sbjct: 810 gtacggaggtaatgaactgggcaatgctattgccgatgtcttgtacggggacgttgttcc 751
Query: 146 aaatgggaaattatctctctcatggccattaaagcttgaagacaatccagcttatttgaa 205
| ||| ||||||||||| |||||||||||||| |||||||| || ||| ||||||||||
Sbjct: 750 aggtggtaaattatctctgtcatggccattaaaacttgaagataacccaacttatttgaa 691
Query: 206 cttcaagactgaatttggcagagttgtctacggtgaggatattttcattggatacagatt 265
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 690 cttcaagactgaatttggcagagttctctacggtgaggatattttcattggatacagatt 631
Query: 266 ctatgaaaagctgcaaaaaagagttgcattccccttcggttacgggttatcttataccga 325
||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 630 ttatgagaagttgcaaagaagagttgcattccccttcggttacgggttatcttatactga 571
Query: 326 atttgccttatctaatctgcaagttcaaataaatgacgaagttatctctgtttctgttga 385
|||||| |||||| |||| ||||| |||| |||| || |||||||||||||||||| |
Sbjct: 570 atttgctttatctcatctacaagtacaaacggatgaggaggttatctctgtttctgttaa 511
Query: 386 tgttaagaacacaggtgagaaatatgc-gggatctgaagtcgtacaagtttatattgctg 444
||| |||||||| |||||| ||||||| |||||| |||||||||||| |||| |||||||
Sbjct: 510 tgtaaagaacacgggtgaggaatatgcggggatccgaagtcgtacaaatttacattgctg 451
Query: 445 ctactgaatcatctgtttctagggcagtgaaggagttgaagggattcaagaaagttttac 504
| |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct: 450 cgactgaatcatctgtttctagggcagtcaaagagttgaagggattcaagaaaattttac 391
Query: 505 ttcaacccgggcaaaccgaaacagcaaagattgatttagtcttgaaggactctgtctcct 564
||||||| ||||||| ||||||| || ||||||||| |||||||||||||| | ||||
Sbjct: 390 ttcaacctgggcaaaatgaaacagtcaaaattgatttaatcttgaaggactctatttcct 331
Query: 565 tcttcgatgaagaagtcggtaagtggtgttcagaagctggtcagtacaaagtcttggtag 624
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tctttgatgaagaagtcggtaagtggtgttcagaagctggtcagtacaaagtcttggtag 271
Query: 625 gtacttcttccgatgacattgtcctgagtgaatctttcgacgtggagaaaacctcttact 684
| || |||||||||| |||||| |||||||||| |||||||||| |||||||||| || |
Sbjct: 270 gcacatcttccgatggcattgtgctgagtgaatttttcgacgtgaagaaaacctcgtatt 211
Query: 685 ggtcaggttttgtagttgagcaatacggttaattacaaacatgtttcactgtccacattt 744
|| |||| ||||||| || | ||| | || | | ||||||||| | ||||| |||||
Sbjct: 210 ggacagg-tttgtagctggccgatatgcttcacttgcaacatgttttaatgtccgcattt 152
Query: 745 attatgtaactagaatgtctttttatgtcttatgatttttagtaaggaaatagaa 799
|| ||||| |||| ||||| ||||||||||||||||| || | || |||||||||
Sbjct: 151 ataatgtatctag-atgtc-ttttatgtcttatgattgttggcaaagaaatagaa 99
>3x_Contig1015
Length = 4152
Score = 180 bits (91), Expect = 3e-45
Identities = 101/103 (98%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 86 gtacggaggcaatgagctgggtaatgctattgctgacgtcttgtatggtgatgttgttcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4050 gtacggaggcaatgagctgggtaatgctattgctgacgtcttgtatggtgatgttgttcc 4109
Query: 146 -aaatgggaaattatctctctcatggccattaaagcttgaaga 187
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4110 aaaatgggaaattatctctctcatggctattaaagcttgaaga 4152
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6952
Number of Sequences: 1807
Number of extensions: 6952
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 4
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)