BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD08RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1068 0.0
>3x_Contig1746
Length = 26672
Score = 1068 bits (539), Expect = 0.0
Identities = 672/702 (95%), Gaps = 11/702 (1%)
Strand = Plus / Plus
Query: 43 gctttggtaacaccattggctgat-cattgggtgcggctatcggtgcc-caagagctgct 100
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 8944 gctttggtaacaccattggctgatacattgggtgcggctatcggtgccacaagagctgct 9003
Query: 101 gtcgattctggattctgtgataactctctacaaatcggtcaaaccggtaagatcgtagct 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9004 gtcgattctggattctgtgataactctctacaaatcggtcaaaccggtaagatcgtagct 9063
Query: 161 ccagaattatacatcgcacttggtgtttctggtgccattcaacatctcgctggtatcaaa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9064 ccagaattatacatcgcacttggtgtttctggtgccattcaacatctcgctggtatcaaa 9123
Query: 221 gacgccaagactatcgtcgctatcaacaaggaccctgaagctccaattttccaagtagca 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9124 gacgccaagactatcgtcgctatcaacaaggaccctgaagctccaattttccaagtagca 9183
Query: 281 gattatggtttggtcggagatttgaacgaattagtgcctgaattgactgaaaagttaaaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9184 gattatggtttggtcggagatttgaacgaattagtgcctgaattgactgaaaagttaaaa 9243
Query: 341 caataggaccagtcattcgtttgaatgatctccgtacttctttattctgatgttttccgc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9244 caataggaccagtcattcgtttgaatgatctccgtacttctttattctgatgttttccgc 9303
Query: 401 tttcaccccagttcaaagaacttttatcaaatgtaattagaccctgacagtaatatatac 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9304 tttcaccccagttcaaagaacttttatcaaatgtaattagaccctgacagtaatatatac 9363
Query: 461 gtattaacacctatatataataaatggaatgtttgcatacgtgcatgttataaacgtcat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9364 gtattaacacctatatataataaatggaatgtttgcatacgtgcatgttataaacgtcat 9423
Query: 521 ctcaattat-aaaaatcattttaagccgacttaaagacaa-cagtaccgnggtttatttc 578
||||||||| ||||||||||| |||||||||||||||||| |||||||| | || |||||
Sbjct: 9424 ctcaattataaaaaatcatttcaagccgacttaaagacaaccagtaccgtgtttaatttc 9483
Query: 579 tcacttcttggcattctcttttcgccttcttact-attatt-cgcatgcatttc-attaa 635
|||||||||||||||||||||||| ||||||||| || ||| |||||||||| | || ||
Sbjct: 9484 tcacttcttggcattctcttttcgtcttcttactcatcattacgcatgcattccaataaa 9543
Query: 636 ataattaggat-caaaaatatttggttcaacctttggtttacc-ttatttaatgttgcca 693
||||||||||| |||||||| || |||| | |||||||||||| | |||||||||||| |
Sbjct: 9544 ataattaggatccaaaaataatttgttctaactttggtttaccataatttaatgttgcaa 9603
Query: 694 accgg-gagaa-aaaaaaaatagggttggtgagatcccaaat 733
|| || ||||| | || ||||||| ||| |||||||||||||
Sbjct: 9604 acaggagagaagataagaaataggtttgatgagatcccaaat 9645
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8674
Number of Sequences: 1807
Number of extensions: 8674
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)