BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD10FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig929 1061 0.0
>3x_Contig929
Length = 3696
Score = 1061 bits (535), Expect = 0.0
Identities = 665/701 (94%), Gaps = 6/701 (0%)
Strand = Plus / Minus
Query: 87 cgatgctctatcactgcttagtgatttttccagtatgcttgattttactgcgtgaatttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3073 cgatgctctatcactgcttagtgatttttccagtatgcttgattttactgcgtgaatttc 3014
Query: 147 ttggaacacttttgtagaatcaatcgcagaatttatattataatgtagctttttcatctc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3013 ttggaacacttttgtagaatcaatcgcagaatttatattataatgtagctttttcatctc 2954
Query: 207 ttccaaaacaaaggggatgcggacacccaattgaaccaaacgcaacaatgcatgtgttat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 ttccaaaacaaaggggatgcggacacccaattgaaccaaacgcaacaatgcatgtgttat 2894
Query: 267 tttattgtatttaccagggtgttgtaatgggtattgagatcgattccggtagccatccaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 tttattgtatttaccagggtgttgtaatgggtattgagatcgattccggtagccatccaa 2834
Query: 327 aacgatggaagcatagtgcttgatttgatgcttttctttatcaggtctgtggatcttgtc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 aacgatggaagcatagtgcttgatttgatgcttttctttatcaggtctgtggatcttgtc 2774
Query: 387 ggccaagctgaagacctggtctatatgacttttgaatttggagtcggtagacaaggattc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 ggccaagctgaagacctggtctatatgacttttgaatttggagtcggtagacaaggattc 2714
Query: 447 ctctgatttagggagatcttcatcataaagttttaattcttgaaatcgttggaagatata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 ctctgatttagggagatcttcatcataaagttttaattcttgaaatcgttggaagatata 2654
Query: 507 aagcatctttataccttgacttgttaactctgttaatatttgatatattgttgcctttca 566
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2653 aggcatctttataccttgacttgttaactctgttaatatttgatatattgttgcc-ttca 2595
Query: 567 agaaaaccgaactgggttgttcatagaaaatctctgattc-aatgccagtagttcgncac 625
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct: 2594 agaaaaccgaactgggttgttcatagaaaatctctgattcaaatgccagtagtcggtca- 2536
Query: 626 caaagngtattgatataaatcttattattcttcggatcgggaagtgttacccaaaaagtc 685
||||| ||||||||||||||||||||| || |||||||| |||||||||| | | |||
Sbjct: 2535 caaagtgtattgatataaatcttatta-tcctcggatcgtgaagtgttacgc-agtagtt 2478
Query: 686 ctttaaccttattgaaaatttctaccaaaagggtggggtttccctacctctttgataatt 745
||||||| ||||||| | ||||||| |||| ||| | |||||| || |||||||||||
Sbjct: 2477 ctttaactttattgatagtttctacgaaaa-ggttgtgtttcctcacatctttgataata 2419
Query: 746 tttttggaaactctttgaattggaagggacttttttttgcc 786
| |||||| || || |||| | |||| ||| ||| ||||||
Sbjct: 2418 tctttggagacactctgaagttgaagtgacatttctttgcc 2378
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9476
Number of Sequences: 1807
Number of extensions: 9476
Number of successful extensions: 136
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)