BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD10RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 898 0.0
>3x_Contig1687
Length = 12800
Score = 898 bits (453), Expect = 0.0
Identities = 513/528 (97%), Gaps = 4/528 (0%)
Strand = Plus / Plus
Query: 49 gcgaagggctagcactaccatcagcacttgccaactcagataaccttgaactatcaacgt 108
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4113 gcgaagggctagcactaccagcagcacttgccaactcagataaccttgaactatcaacgt 4172
Query: 109 gttggaaactgttgttatttttattattaccattagtattattgtcattattattattgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4173 gttggaaactgttgttatttttattattaccattagtattattgtcattattattattgt 4232
Query: 169 taaggttactgctatgattcacggtattgatattatggtcattaatattacttttgatgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4233 taaggttactgctatgattcacggtattgatattatggtcattaatattacttttgatgt 4292
Query: 229 tgttgacattgggaataggagtatcaagacctccgacaggcatagtatccatgacgctgc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4293 tgttgacattgggaataggagtatcaagacctccgacaggcatagtatccatgacgctgc 4352
Query: 289 cttcttgtttaacttttgccctagattttttattcgatgggacaggaacggtactgcctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4353 cttcttgtttaacttttgccctagattttttattcgatgggacaggaacggtactgcctt 4412
Query: 349 ctgttgttgttgcaccaacatgcctattatcttgttcgttagccgtacccgttcttgatc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4413 ctgttgttgttgcaccaacatgcctattatcttgttcgttagccgtacccgttcttgatc 4472
Query: 409 ctctagtaacagtagccacactagactgcggcgatgactgctctcctacagncccgtcat 468
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4473 ctctagtaacagtagccacactagactgcggcgatgactgctctcctacagccccgtcat 4532
Query: 469 acccatattttgcaagcttgatacattttacacctgcttttcaacacgccgtgcaactgg 528
|||||||||| ||| ||| ||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 4533 acccatatttggcaggctggatacatttcacacctgctttcaaacacgcggtgcaactgg 4592
Query: 529 gaatctttgggatcacaccttttgttttccggcgtttgacacaacaaa 576
||||| ||| ||||||| |||||| |||||| || |||||||||||||
Sbjct: 4593 gaatc-ttgtgatcaca-cttttg-tttccgccg-ttgacacaacaaa 4636
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,342
Number of Sequences: 1807
Number of extensions: 13342
Number of successful extensions: 235
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)