BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD11FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1346 1255 0.0
>3x_Contig1346
Length = 6154
Score = 1255 bits (633), Expect = 0.0
Identities = 735/761 (96%), Gaps = 6/761 (0%)
Strand = Plus / Minus
Query: 85 ctaaatttgttggaccatcaatca-ttctagcgtacttgccatacaactcagaaagagac 143
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6049 ctaaatttgttggaccgtcaatcaattctagcgtacttgccatacaactcagaaagagac 5990
Query: 144 actccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggccttta 203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5989 actccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggccgtta 5930
Query: 204 tacaggtttaacccttacgaagaacgcgacgaccaagttttcaaattggactcctctgtt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 tacaggtttaacccttacgaagaacgcgacgaccaagttttcaaattggactcctctgtt 5870
Query: 264 atcaaacaacaactgaaggactttttagaccgagagaataagctcactcttctagctcaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5869 atcaaacaacaactgaaggactttttagaccgagagaataagctcactcttctagctcaa 5810
Query: 324 aagtccccagagcttgccagaaatttgaagcattccgcctcagatgcgattcaattgaaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 aagtccccagagcttgccagaaatttgaagcattccgcctcagatgcgattcaattgaaa 5750
Query: 384 caagacagaagggctaaagcagcattcgatcaactcttagaaggtctctctggccctcct 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5749 caagacagaagggctaaagcagcattcgatcaactcttagaaggtctctctggccctcct 5690
Query: 444 cttcacatttatcatgcttctgacggtggcaatgcagctaatttagcaaaaagattgggt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5689 cttcacatttatcatgcttctgacggtggcaatgcagctaatttagcaaaaagattgggt 5630
Query: 504 acaagggcatctgctagaggtctaaaaactattgtactatcaatggaagacattgttcta 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5629 acaagggcatctgctagaggtctaaaaactattgtactatcaatggaagacattgttcta 5570
Query: 564 gaagagttaccaggtgaagagaatgttgtatttataacgtcaactgctggtcaaggtgaa 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5569 gaagagttaccaggtgaagagaatgttgtatttataacgtcaactgctggtcaaggtgaa 5510
Query: 624 ttccctcaagat-gtaatgcattttgggatgctctgaagtcttctactgacctcgattta 682
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5509 ttccctcaagatggtaaggcattttgggatgctctgaagtcttctactgacctcgattta 5450
Query: 683 acttctttgaatttctccgcgtttggtttaagtgactctgcatactggccacgtaaagat 742
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct: 5449 gcttctttgaatttctccgtgtttggtttaggtgactctgcatactggccacgtaagga- 5391
Query: 743 agaccccatttacttcaccaaa-ccgttaagaatttgttaaaaagattagaattgttttc 801
|||| || ||||| || |||| ||| |||| ||||||| || |||||||||||| ||||
Sbjct: 5390 agacgcccattactacaacaaacccgctaaggatttgttcaagagattagaattgctttc 5331
Query: 802 tggtcaagaaactattttttttggga-tgggtgattaccag 841
|||||||| ||||| ||| ||||||| |||||||| |||||
Sbjct: 5330 tggtcaag-aactagtttctttgggattgggtgatgaccag 5291
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6580
Number of Sequences: 1807
Number of extensions: 6580
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)