BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZD11RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 1027 0.0
>3x_Contig1795
Length = 38452
Score = 1027 bits (518), Expect = 0.0
Identities = 642/668 (96%), Gaps = 13/668 (1%)
Strand = Plus / Plus
Query: 47 agatatcaatctatcccaattgatcactactatttgttgccatttgagttccattctaat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11101 agatatcaatctatcccaattgatcactactatttgttgccatttgagttccattctaat 11160
Query: 107 aacaaaagtttagagtggcctaaacttgaaggaagcgtctaccaaaatggatctgttgaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11161 aacaaaagtttagagtggcctaaacttgaaggaagcgtctaccaaaatggatctgttgaa 11220
Query: 167 tatttattgaaagatgagttcaatgtctctaagacattgaaatcagaagatgagactgag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11221 tatttattgaaagatgagttcaatgtctctaagacattgaaatcagaagatgagactgag 11280
Query: 227 tggactctaagagctcacagatacaagctacacgacgtcaagatttttgttatctcggta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11281 tggactctaagagctcacagatacaagctacacgacgtcaagatttttgttatctcggta 11340
Query: 287 tatcaggatctttttaacagaattaactctgcagaaccgttcgatattttcatcgttggt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11341 tatcaggatctttttaacagaattaactctgcagaaccgttcgatattttcatcgttggt 11400
Query: 347 actgcttacgttgcaatggcatatactttgatatctttattcatcgaaatgcgagttact 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11401 actgcttacgttgcaatggcatatactttgatatctttattcatcgaaatgcgagttact 11460
Query: 407 ggatctaaattctggattgctttagctgctgtggtcaactcatgaactgcnttttttgtc 466
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 11461 ggatctaaattctggattgctttagctgctgtggtcaactcaggaactgctttttttgtc 11520
Query: 467 gcactttacgcaactcataagatttgcaacata-cagtaaccgcactgagtttgattgaa 525
||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 11521 gcactttacgcaactcaaaagatttgcaacaaaccagtaaccgcactgagtttgattgaa 11580
Query: 526 ggtgttccattcgttgtggttattgttggtttc-agcataagatt-agttggccaa-tac 582
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 11581 ggtgttccattcgttgtggttattgttggtttcaagcataagattaagttggccaagtac 11640
Query: 583 gtagtggaccagt--cagagattccatgtct-acaaaa-gtaac-acttatcaagtcggc 637
||||||||||||| |||||||| |||||| |||||| ||||| ||||||||||||| |
Sbjct: 11641 gtagtggaccagttcaagagattcgatgtctcacaaaaggtaacgacttatcaagtcgtc 11700
Query: 638 tttgattc-atgttg-acgaaagtcaacgtctcgttcaa-atcttttgttttg-cttatc 693
| |||| | |||||| ||||| ||||||||||||||||| ||| |||||| || ||||||
Sbjct: 11701 tatgatgcaatgttgaacgaaggtcaacgtctcgttcaagatcatttgttatgtcttatc 11760
Query: 694 ccttttgg 701
|||||||
Sbjct: 11761 gcttttgg 11768
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7817
Number of Sequences: 1807
Number of extensions: 7817
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)