BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE01RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1652 1405 0.0
>3x_Contig1652
Length = 14842
Score = 1405 bits (709), Expect = 0.0
Identities = 807/832 (96%), Gaps = 7/832 (0%)
Strand = Plus / Minus
Query: 43 cttcttgagtctttccttcctttcttcagctttcttggatctcttcttttcatccttcgc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12562 cttcttgagtctttccttcctttcttcagctttcttggatctcttcttttcatccttcgc 12503
Query: 103 attcgaaatggtgagaaccttttgcatgaaggaacgtgcctttttctcttcgccgcctag 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12502 attcgaaatggtgagaaccttttgcatgaaggaacgtgcctttttctcttcgccgcctag 12443
Query: 163 aacgacagctctcttagccatgtatgttttcttcttttgcggtttcatttgatagatctg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12442 aacgacagctctcttagccatgtatgttttcttcttttgcggtttcatttgatagatctg 12383
Query: 223 ggatttgaaaggtaagtctttggcaacagattttggtacctttaaaccgttgaagttcct 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12382 ggatttgaaaggtaagtctttggcaacagattttggtacctttaaaccgttgaagttcct 12323
Query: 283 ttcaactctttcaaccttcttatatgtactgtcattgttggtcggtaaatcgattccaag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12322 ttcaactctttcaaccttcttatatgtactgtcattgttggtcggtaaatcgattccaag 12263
Query: 343 agatgctctaatttgaccagttagtctcaaacccttccattcagttttatcttttagcaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12262 agatgctctaatttgaccagttagtctcaaacccttccattcagttttatcttttagcaa 12203
Query: 403 caatgaagtaactgggttgtagaatttcttaacttggattggataccatgacctaagaat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12202 caatgaagtaactgggttgtagaatttcttaacttggattggataccatgacctaagaat 12143
Query: 463 tataatgtcactcaatagtatcttatcctcaaaagttgccctgaaatggccttctggttn 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12142 tataatgtcactcaatagtatcttatcctcaaaagttgccctgaaatggccttctggttt 12083
Query: 523 tgatagagcacgcttgatttcaccacgaataccggaaacagtcttgatttgggcaccttc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12082 tgatagagcacgcttgatttcaccacgaataccggaaacagtcttgatttgggcaccttc 12023
Query: 583 gaaccgtgcaacttccatagcgctagagaacatatcctttatganagcagtgttcttgaa 642
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12022 gaaccgtgcaacttccatagcgctagagaacatatcctttatgaaggcagtgttcttgaa 11963
Query: 643 gattttgtaaggattaccannacagc-ttaatttcttcacaaattctacgcttgcatcga 701
|||||||||||||| |||| | ||| ||||||||||||||| |||||||||||||||||
Sbjct: 11962 gattttgtaaggataaccaaca-agctttaatttcttcacaatttctacgcttgcatcga 11904
Query: 702 tctcctctac-ataccagtcgcagctattctgaaacttnccagtgtatcactgttagcaa 760
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 11903 tctcctctacaataccagtcgcagctattctgaaacttccagttgtatcactgttagcaa 11844
Query: 761 ctttttg-acaccacagaaagtggtatttggcgagcacaagggaccataaaaagaa-ctg 818
|| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 11843 ctatttgaacaccacagaaagtggtatttggcgagcacaagggaccatagaaagaagctg 11784
Query: 819 gacattaa-catgttctggaatttacttc-acattctattcctggttctaga 868
||| ||| ||||||||||| | |||||| |||||||| |||||||||||||
Sbjct: 11783 tacaataagcatgttctggagtatacttcaacattctagtcctggttctaga 11732
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7199
Number of Sequences: 1807
Number of extensions: 7199
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)