BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE02FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1405 0.0
>3x_Contig1784
Length = 28126
Score = 1405 bits (709), Expect = 0.0
Identities = 813/841 (96%), Gaps = 5/841 (0%)
Strand = Plus / Plus
Query: 88 aaaggccctagagaaactagaaagaaaacaacaggctagagaggaaagagaattggctaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14605 aaaggccctagagaaactagaaagaaaacaacaggctagagaggaaagagaattggctaa 14664
Query: 148 gaaattatcgtctaaagttgtgatcagaagagaagcaagaacaaaacggaagtgtatgat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14665 gaaattatcgtctaaagttgtgatcagaagagaagcaagaacaaaacggaagtgtatgat 14724
Query: 208 tgctatctctggactagaagttttcgaaattgacatgaagaaactttccaaaacttttgc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14725 tgctatctctggactagaagttttcgaaattgacatgaagaaactttccaaaacttttgc 14784
Query: 268 atccaaatttgctacaggttgttctatctccaaaaatgccgagaagaaagaagaagtgat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14785 atccaaatttgctacaggttgttctatctccaaaaatgccgagaagaaagaagaagtgat 14844
Query: 328 tgttcaaggtgatttggcagatgaagtagaagcatatatacattctttactagaggaaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14845 tgttcaaggtgatttggcagatgaagtagaagcatatatacattctttactagaggaaaa 14904
Query: 388 aggtatgaaagaagttaaggtagaagtaatcgatgccgcgaagaagaagaaaaaagctga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14905 aggtatgaaagaagttaaggtagaagtaatcgatgccgcgaagaagaagaaaaaagctga 14964
Query: 448 aactacaactacaccaggatccgaaaataagaaatgattatgagaagcacatttagctga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14965 aactacaactacaccaggatccgaaaataagaaatgattatgagaagcacatttagctga 15024
Query: 508 cacccttttgtcataactttatgttagcctcttaggtagaaagatttatataataccgca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15025 cacccttttgtcataactttatgttagcctcttaggtagaaagatttatataataccgca 15084
Query: 568 ttcatcgttcaacaaactgcacaattaaacatcagtaagatgctatatctataccctcat 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15085 ttcatcgttcaacaaactgcacaattaaacatcagtaagatgctatatctataccctcat 15144
Query: 628 atataataactgtagtagctattaggttcccataaatatactcccatggtgaggaatggc 687
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 15145 atataatacctgtagtagctattaggttcccataaatatactcccatggtgaggaagggc 15204
Query: 688 aataccttacaaaag-atatcccggtaagatcactttttcttcacttccacttccattat 746
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 15205 aataccttacaaaagaatatccgggtaagatcactttttcttcacttccacttccattat 15264
Query: 747 gcaccgttagatggggaggaaacatgtcaaaatgtaaaattaactaaaagcctttttcac 806
|||||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 15265 gcaccgttagatggtgaggaaacatgtcaaaatgtcaaacaaactaaaagctattttcac 15324
Query: 807 cgagcacagagagtaaacaggatatagagccttgtttaataccctgaccactcttggtat 866
||||||||||||||||||| || | ||||||||| |||||| |||| ||||||| ||||
Sbjct: 15325 cgagcacagagagtaaacaagagaaagagccttgagtaatacactgagcactctt-gtat 15383
Query: 867 ttggctaccaatttggttgaattaaggaaaacattcggaatgcaattgtacctatgacca 926
||| |||||| |||||||||| | || || ||||||||| |||||||| |||||||||
Sbjct: 15384 ttgcttaccaa-ttggttgaatcacgg-aagcattcggaagtcaattgta-ctatgacca 15440
Query: 927 g 927
|
Sbjct: 15441 g 15441
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8406
Number of Sequences: 1807
Number of extensions: 8406
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)