BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZE02RM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig992                                                         1334   0.0  

>3x_Contig992 
          Length = 4146

 Score = 1334 bits (673), Expect = 0.0
 Identities = 728/741 (98%), Gaps = 4/741 (0%)
 Strand = Plus / Minus

                                                                        
Query: 50   agcatcataaggagccattgcttctactaaacgcttttgatccacgaatgaaattttgac 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4079 agcatcataaggagccattgcttctactaaacgcttttgatccacgaatgaaattttgac 4020

                                                                        
Query: 110  gacagcttcccagtctgctgttttgccatttagatccaactctacttcgttaggatagaa 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4019 gacagcttcccagtctgctgttttgccatttagatccaactctacttcgttaggatagaa 3960

                                                                        
Query: 170  gtccaagataggagagtgttcatcatacatgagtggtctgtacacaactggaatcaaatt 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3959 gtccaagataggagagtgttcatcatacatgagtggtctgtacacaactggaatcaaatt 3900

                                                                        
Query: 230  ctttgatctctcaggcaagacggccatcaattgttggaagggcttgaaaggctgtccctt 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3899 ctttgatctctcaggcaagacggccatcaattgttggaagggcttgaaaggctgtccctt 3840

                                                                        
Query: 290  gtgaaattctatgttctgatctatacctttgatcacatctgatatacgaggagcgtaatg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3839 gtgaaattctatgttctgatctatacctttgatcacatctgatatacgaggagcgtaatg 3780

                                                                        
Query: 350  atatctgtaataccaggaccaagatggacatccacgataatagtagtataaaacccattg 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3779 atatctgtaataccaggaccaagatggacatccacgataatagtagtataaaacccattg 3720

                                                                        
Query: 410  taaacctccgacatagttttctgtcatttcttttagactatcagtatcattgatggaaaa 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3719 taaacctccgacatagttttctgtcatttcttttagactatcagtatcattgatggaaaa 3660

                                                                        
Query: 470  atctaatttatctttatagtattgatctttccactcaacgaatctctcgctataaatttc 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3659 atctaatttatctttatagtattgatctttccactcaacgaatctctcgctataaatttc 3600

                                                                        
Query: 530  acgctcttcttctaattcttcttcagatgcaataataataccttgttcatatttcttaat 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3599 acgctcttcttctaattcttcttcagatgcaataataataccttgttcatatttcttaat 3540

                                                                        
Query: 590  agaacgtcttgtttcgtgaatacgggcttcatgctcttcatctgtttcttgcacattgat 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3539 agaacgtcttgtttcgtgaatacgggcttcatgctcttcatctgtttcttgcacattgat 3480

                                                                        
Query: 650  ggagtcttaattcaacttgaagtagtacaaatcctttgatttagattgagcaagaattaa 709
            ||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 3479 ggagtctaaatccaacttgaagtagtacaaatcttttgatttagaatgagcaagaattaa 3420

                                                                        
Query: 710  taccaaatcaaatgcgaatttcctttaagaattccagtttggcccgaaaccaattctttt 769
              |||||||||||||||| |||||| ||||| ||||| |||||||| ||||||||| |||
Sbjct: 3419 acccaaatcaaatgcgaa-ttccttcaagaaatccaggttggcccg-aaccaattc-ttt 3363

                                 
Query: 770  atcctcaagaagggaaaattt 790
            ||||||||| |||||||||||
Sbjct: 3362 atcctcaag-agggaaaattt 3343


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7503
Number of Sequences: 1807
Number of extensions: 7503
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)