BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE03FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1544 0.0
>3x_Contig1730
Length = 17223
Score = 1544 bits (779), Expect = 0.0
Identities = 806/814 (99%), Gaps = 1/814 (0%)
Strand = Plus / Plus
Query: 86 attgcggcagaattagcaaccaatgctggtgtccataccatcattatgaagagcgacact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 attgcggcagaattagcaaccaatgctggtgtccataccatcattatgaagagcgacact 2739
Query: 146 ccagaaaacatttccaaaattgttctctacatgcaggaaagggacgatggcgtgaatgaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 ccagaaaacatttccaaaattgttctctacatgcaggaaagggacgatggcgtgaatgaa 2799
Query: 206 cttacacaagatttggctgacctacaactcactgagatgcaaagtttagttaataatcat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2800 cttacacaagatttggctgacctacaactcactgagatgcaaagtttagttaataatcat 2859
Query: 266 gttcctcttcatactaggtttattgccaatagtaatcatcatcacttgaagaacagacaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 gttcctcttcatactaggtttattgccaatagtaatcatcatcacttgaagaacagacaa 2919
Query: 326 ttctggatgcttcatggactcgtcagtcaaggcgctgtaattatagacattggtgcatac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 ttctggatgcttcatggactcgtcagtcaaggcgctgtaattatagacattggtgcatac 2979
Query: 386 gaagcgttaacgaggaaaaacaaagctggtttgttacctgcaggcgttattgaagtccaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 gaagcgttaacgaggaaaaacaaagctggtttgttacctgcaggcgttattgaagtccaa 3039
Query: 446 gggagcttccatgaacatgaatgtatagatataaaattgggagtcagggattcagatgga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 gggagcttccatgaacatgaatgtatagatataaaattgggagtcagggattcagatgga 3099
Query: 506 aatttggataaatccgttgcactgaaaacagtaggtagggctcgttgcaactatacaagc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 aatttggataaatccgttgcactgaaaacagtaggtagggctcgttgcaactatacaagc 3159
Query: 566 acagagttatcaaaaattaaaggtctgcaaagtgatcagattgaagatattctaggctat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 acagagttatcaaaaattaaaggtctgcaaagtgatcagattgaagatattctaggctat 3219
Query: 626 gctgatagtgaatacgtagctcatagggaaaatttagcattccctcctcattaacctaaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 gctgatagtgaatacgtagctcatagggaaaatttagcattccctcctcattaacctaaa 3279
Query: 686 gtgaatgaaaatatactttacatgttacgtttaactctcatacacgtagccctttaataa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3280 gtgaatgaaaatatactttacatgttacgtttaactctcatacacgtagccctttaataa 3339
Query: 746 aagcatatatagataatcgaacatcttgcatcaatttatatatatatacggccatattga 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3340 aagcatatatagataatcgaacatcttgcatcaatttatatatatatacggccatattga 3399
Query: 806 gaatttataaaaatattattaatctgcgctcaggcttcacanagaaacacttctattttg 865
|| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 3400 gattttataaaaatattattaatctgcgctcaggcttcacaaagaaacactctaattttg 3459
Query: 866 gagga-tattaaatatttcaggtaatgggacctt 898
||||| |||||||||| ||||||||||| |||||
Sbjct: 3460 gaggattattaaatatatcaggtaatggaacctt 3493
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8991
Number of Sequences: 1807
Number of extensions: 8991
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)