BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZE03RM1.SCF screened BAC_end
         (906 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1705                                                        1469   0.0  

>3x_Contig1705 
          Length = 16734

 Score = 1469 bits (741), Expect = 0.0
 Identities = 801/817 (98%), Gaps = 3/817 (0%)
 Strand = Plus / Plus

                                                                         
Query: 47    ttttcctctcggagttaatagaatggatatatatgtgaataaatgtctacatcaagttca 106
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11447 ttttcctctcggagttaagagaatggatatatatgtgaataaatgtctacatcaagttca 11506

                                                                         
Query: 107   tacttctagctgttaatactggaaagtaaagaggctagcctttgctaattgaccgacaaa 166
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11507 tacttctagctgttaatactggaaagtaaagaggctagcctttgctaattgaccgacaaa 11566

                                                                         
Query: 167   taaagacaacatctcacaaatccaggactaatgactacagcaactgctgctccaaaatta 226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11567 taaagacaacatctcacaaatccaggactaatgactacagcaactgctgctccaaaatta 11626

                                                                         
Query: 227   ctgtttctgcaaggcttcttacaaaatggtaaagtcttcagtgagaagtcttctggtatt 286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11627 ctgtttctgcaaggcttcttacaaaatggtaaagtcttcagtgagaagtcttctggtatt 11686

                                                                         
Query: 287   agaaagctactgaagaaatctaatgttcaatgtgattacatggatgcgccagtgatcctt 346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11687 agaaagctactgaagaaatctaatgttcaatgtgattacatggatgcgccagtgatcctt 11746

                                                                         
Query: 347   gaaaagaaagacttgcctttcgaaatggacgatgcaaagtggcaagaaacccttaatgca 406
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11747 gaaaagaaagacttgcctttcgaaatggacgatgcaaagtggcaagaaacccttaatgca 11806

                                                                         
Query: 407   ggtgttaacagagcatggttctatcatagcgacatctcatctgaattggatttaagccca 466
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11807 ggtgttaacagagcatggttctatcatagcgacatctcatctgaattggatttaagccca 11866

                                                                         
Query: 467   gctattgaagctgtcactaaatatatcaaggataatggtccatacgacggtattgttggg 526
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11867 gctattgaagctgtcactaaatatatcaaggataatggtccatacgacggtattgttggg 11926

                                                                         
Query: 527   tttagtcaaggtgctgcattggcttctatcatcactaacaaaatcaccgaattggtccca 586
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11927 tttagtcaaggtgctgcattggcttctatcatcactaacaaaatcaccgaattggtccca 11986

                                                                         
Query: 587   tctcatcctcagttcaaggtgtccttgttgatcgctgcttactctttcactgaaccagat 646
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11987 tctcatcctcagttcaaggtgtccttgttgatcgctgcttactctttcactgaaccagat 12046

                                                                         
Query: 647   ccagaaaatgagggacaattaagaatctctc-aaaatttcaagattcttttaaacctatg 705
             ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct: 12047 ccagaaaatgagggacaattaagaatctctcaaaaattccaagattctttcaaacctatg 12106

                                                                         
Query: 706   gatgaccgtactaccaagatgctgtttgtttattgtaccgaagatatggctgttccatgt 765
             ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 12107 gatgaccgtactaccaagatgctgtttgtttatggtaccgcagatatggctgttccatgt 12166

                                                                         
Query: 766   gaaagagcgaagt-tttattacacatttacactaaaggtcaagagttagatgactgtaag 824
             ||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 12167 gaaagagcgaagtatttatacaacatttacactaaaggtcaagagttagatgactgtaag 12226

                                                  
Query: 825   gcttat-aacatccagttggtcatttgggttcaaaca 860
             |||||| | ||||||| ||||||| ||| | ||||||
Sbjct: 12227 gcttatgagcatccaggtggtcatatggttccaaaca 12263


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6722
Number of Sequences: 1807
Number of extensions: 6722
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)