BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE05FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 1481 0.0
>3x_Contig1572
Length = 12810
Score = 1481 bits (747), Expect = 0.0
Identities = 796/810 (98%), Gaps = 2/810 (0%)
Strand = Plus / Plus
Query: 124 aacttctatggaaccatatggggtagcagacttcagggcatctaaaaatatgcagtttat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 aacttctatggaaccatatggggtagcagacttcagggcatctaaaaatatgcagttaat 60
Query: 184 -tctagttacttcatcgatcgttggtggaaatagtcggttcaacttagctgcggaaagag 242
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctagttacttcatcgatcgttagtggaaatagtcggttcaacttagctgcggaaagag 120
Query: 243 tgggaatgtcttcattgaggacatcaattcttaacggtattaaaaacttctgtaagaact 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgggaatgtcttcattgaggacatcaattcttaacggtattaaaaacttctgtaagaact 180
Query: 303 ctataattgacaaagtgaagtttgtttgtaatgttaaaagttcttgacatacggaattga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctataattgacaaagtgaagtttgtttgtaatgttaaaagttcttgacatacggaattga 240
Query: 363 ttagtggttcgtccttttcagtctgctcttctggtgaaaagtcgggcgttgtgtacacgc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttagtggttcgtccttttcagtctgctcttctggtgaaaagtcgggcgttgtgtacacgc 300
Query: 423 gttctgtttgctccggcgagtattctgttaacgggtcaaacaattgctctaattgttcac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttctgtttgctccggcgagtattctgttaacgggtcaaacaattgctctaattgttcac 360
Query: 483 ctaggtaaaataccaactcattattggcatcaatagattcaggcttgttttcatacacta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctaggtaaaataccaactcattattggcatcaatagattcaggcttgttttcatacacta 420
Query: 543 cgtcaactagcagtgattgtactgatctaggacagatcaacccatgcaacatgatgcttt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgtcaactagcagtgattgtactgatctaggacagatcaacccatgcaacatgatgcttt 480
Query: 603 tccccaaatttccaggggtacaatattccaccattttacatccattggccaaatcgcctg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccccaaatttccaggggtacaatattccaccattttacatccattggccaaatcgcctg 540
Query: 663 aatgggtctgatcatactcgaatttcaatggaactccatcagtgatcttttgcactattg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatgggtctgatcatactcgaatttcaatggaactccatcagtgatcttttgcactattg 600
Query: 723 actcatctgtagtagcatatttctctaataaagagcaagcaagtactttccttacatttg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actcatctgtagtagcatatttctctaataaagagcaagcaagtactttccttacatttg 660
Query: 783 agtccttatatctattactngaggtcaagacagcaggtccataaaccgaattgtcatgga 842
||||||||||||||||||| | ||||||||||||||||||| || |||||||||||||
Sbjct: 661 agtccttatatctattactgaggttcaagacagcaggtccatagacggaattgtcatgga 720
Query: 843 agttaacgtttgggaaatgcgtggtaccaactttatcaatggagtatgccccaaacttgt 902
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 721 agttaacgtttgggaaatgcgtggtaccaactttatcaatgaagaatgccccaaacttgt 780
Query: 903 tccgtgtcgggttccaagttaacacaggcc 932
| ||||||||| ||||||| ||||||||||
Sbjct: 781 t-cgtgtcgggatccaagtaaacacaggcc 809
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5206
Number of Sequences: 1807
Number of extensions: 5206
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)