BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE07FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1108 0.0
>3x_Contig675
Length = 2979
Score = 1108 bits (559), Expect = 0.0
Identities = 623/639 (97%), Gaps = 4/639 (0%)
Strand = Plus / Plus
Query: 88 gagatactgattagcatcagcaaattataagaatacacgcatcaaacaagggaacttgca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 gagatactgattagcatcagcaaattataagaatacacgcatcaaacaagggaacttgca 1736
Query: 148 ctgatctctgagttgaaaataagatgacgatggaggaaggtgggttcatcagaaggacaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 ctgatctctgagttgaaaataagatgacgatggaggaaggtgggttcatcagaaggacaa 1796
Query: 208 ggcagagcgggaaccggactcgaactgccaagaagaatgtcgtatacattgaatcaagtt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 ggcagagcgggaaccggactcgaactgccaagaagaatgtcgtatacattgaatcaagtt 1856
Query: 268 caggtgagtccgaggatgagccattagtaaagaaagaaattaagagcaataagggtaacg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 caggtgagtccgaggatgagccattagtaaagaaagaaattaagagcaataagggtaacg 1916
Query: 328 caaaagccaatgacaagggcaagtgcaaaaccaagggcacaactaaggcaaaccgaaatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 caaaagccaatgacaagggcaagtgcaaaaccaagggcacaactaaggcaaaccgaaatt 1976
Query: 388 tggattcggatttagagtatgatgattctttggttctcttatcggatcagacggacagat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 tggattcggatttagagtatgatgattctttggttctcttatcggatcagacggacagat 2036
Query: 448 ctggtgatgaatcaagtgatgagctcaaacgtgaacaggtagtcgaactgatatcctctt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 ctggtgatgaatcaagtgatgagctcaaacgtgaacaggtagtcgaactgatatcctctt 2096
Query: 508 ctgatgatgatgaacctctgcaaaatggaccgcaaaagaagaagagataggctaatggta 567
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2097 ctgatgatgatgaacctctgcaaaatggaccgcaaaagaagaagagaaaggctaatggta 2156
Query: 568 gggctggtggtgccactgctacttagaagaagccgac-aaacccaagatctcttctttcg 626
||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||
Sbjct: 2157 gggctggtggtgccactgctactaagaagaagccgacaaaacccaagatctctcctttcg 2216
Query: 627 aaag-aacacagcaaagttgtatgctcatatttcaaaac-tattcatgtgttcaaaaaat 684
|||| |||||||||||||||||||||||| |||| ||| ||| |||||||||||||||
Sbjct: 2217 aaagaaacacagcaaagttgtatgctcatcattcagaacttatcgatgtgttcaaaaaat 2276
Query: 685 tacaggaatccccgattacgcaaggtggaaagaactcct 723
|||||||||| |||| |||| ||||||||||| |||||
Sbjct: 2277 tacaggaatcgccga-tacggcaggtggaaagagctcct 2314
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8444
Number of Sequences: 1807
Number of extensions: 8444
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)