BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC35ZE08FM1.SCF screened BAC_end
         (957 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1394                                                        1296   0.0  

>3x_Contig1394 
          Length = 5721

 Score = 1296 bits (654), Expect = 0.0
 Identities = 680/686 (99%), Gaps = 2/686 (0%)
 Strand = Plus / Minus

                                                                       
Query: 87  taccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtc 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtc 797

                                                                       
Query: 147 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 737

                                                                       
Query: 207 atggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 677

                                                                       
Query: 267 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 617

                                                                       
Query: 327 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 557

                                                                       
Query: 387 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 497

                                                                       
Query: 447 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 437

                                                                       
Query: 507 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggttgt 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggttgt 377

                                                                       
Query: 567 accgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttttca 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 accgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttttca 317

                                                                       
Query: 627 gatgcattggcgggatgttatttaccgttgctgtttttcttttcttccctagtctgctat 686
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaggcattggcgggatgttatttaccgttgctgtttttcttttcttccctagtctgctat 257

                                                                       
Query: 687 ctgaattctttgtatctgtcaaaaattgaaatgaaactaacatcattaatggtgtcatgt 746
           |||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 256 ctgaatcctctgtatctgtcaaaaattgaaatggaactaacatcattaatggtgtcatgt 197

                                     
Query: 747 tgtggcgtgtggtgcatatttttgtg 772
           ||| |||||| |||||||||||||||
Sbjct: 196 tgt-gcgtgt-gtgcatatttttgtg 173


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6528
Number of Sequences: 1807
Number of extensions: 6528
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)