BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZE08RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1320 1144 0.0
>3x_Contig1320
Length = 7350
Score = 1144 bits (577), Expect = 0.0
Identities = 619/629 (98%), Gaps = 3/629 (0%)
Strand = Plus / Minus
Query: 47 tatcgaacgttagatatttccaaacctctcctatatcgagaaaaatgccacttccacctg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825 tatcgaacgttagatatttccaaacctctcctatatcgagaaaaatgccacttccacctg 4766
Query: 107 ttcttgaatcacgtcgtcccaaagaatctccggaattcgactattctacactttccaatt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4765 ttcttgaatcacgtcgtcccaaagaatctccggaattcgactattctacactttccaatt 4706
Query: 167 acaagtctttcaaggtaaagcattcacagttggatgttagcgttgatttcaaaaagaaaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 acaagtctttcaaggtaaagcattcacagttggatgttagcgttgatttcaaaaagaaaa 4646
Query: 227 ccattagtggttctgtctcttacgagattgaaaaggtgaagaaggatgaaaacactatca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 ccattagtggttctgtctcttacgagattgaaaaggtgaagaaggatgaaaacactatca 4586
Query: 287 agttggatacttcttacttgaagatctctaaagtcaaagtggatgatgaagacgacgtga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 agttggatacttcttacttgaagatctctaaagtcaaagtggatgatgaagacgacgtga 4526
Query: 347 agtttaaattgttagaaagaaaacatccattgggtgctcagttaattgttagtccatctt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 agtttaaattgttagaaagaaaacatccattgggtgctcagttaattgttagtccatctt 4466
Query: 407 ctttgccggaaatattccatttgtgcttacaattttcgacaactgcagactgtacagcat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 ctttgccggaaatattccatttgtgcttacaattttcgacaactgcagactgtacagcat 4406
Query: 467 tgcaatggcttgatgaacaccaaacatctgggaaaccgtacgttttctctc-attggaag 525
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4405 tgcaatggcttgatgaacaccaaacatctgggaaaccgtacgttttctctcaattggaag 4346
Query: 526 ccatccatgcgagaagtctattcacatgttttgataccccaagtgtaaaatctacatatt 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 ccatccatgcgagaagtctattcacatgttttgataccccaagtgtaaaatctacatatc 4286
Query: 586 ttgccaacatcaagtctgaattaccagttgtgttttcgggtattccaacaggttacaatg 645
| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct: 4285 tcgccaacatcaagtctgaattaccagttgtgttttcgggtatccaaacaggttacgatg 4226
Query: 646 atttctcttaagg-ctactctttcaagca 673
| |||| ||||| |||||||||||||||
Sbjct: 4225 a-ttctactaaggtctactctttcaagca 4198
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7370
Number of Sequences: 1807
Number of extensions: 7370
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)